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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCGTCTGGTGGGAACCATGAGCTTCGTGTTCCGAGGAAGCAGGGCCGACATCGAGGCCGGTGGCTTCACAGGGTTCGCCCCCGAGCGCCGCACCATGgtgagtgtctgtctgctcaacccatgatgcatttctgctaaaatgtaactggtggtagtgtagcttaaaccggtttccttgtcctgatgtctgatcccatttgtatgtgtgcttgagtgtag

Basic information

species Zea mays
transcript GRMZM2G492252_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g16570.2 (Oryza sativa), 5'ss of exon 2
GCAGCGTCTGGTGGGAACCATGAGCTTCGTGTTCCGAGGAAGCAGGGCCGACATCGAGGCCGGTGGCTTCACAGGGTTCGCCCCCGAGCGCCGCACCATGgtgagtgtctgtctgctcaacccatgatgcatttctgctaaaatgtaactggtggtagtgtagcttaaaccggtttccttgtcctga-tgtctga-tcccatttgtatgtgtg--cttgagtgtag
|  | | ||||| ||  ||||||||||||||||||| || ||||| |  |||||||||||||| |||||| | ||||||||||| ||||||||| |||||||||| ||                        ||||||| |||||||  |  ||| |   ||   || | |  |||  ||||  ||| | ||||| |||||| ||| || | |  ||||  || ||
GTGGTGGCTGGTTGGCGCCATGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGgtgagcgt------------------------ttctgcttaaatgtaggttttggcatcctaaagtagatc--tttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcag

upper sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g16570.3 (Oryza sativa), 5'ss of exon 2
GCAGCGTCTGGTGGGAACCATGAGCTTCGTGTTCCGAGGAAGCAGGGCCGACATCGAGGCCGGTGGCTTCACAGGGTTCGCCCCCGAGCGCCGCACCATGgtgagtgtctgtctgctcaacccatgatgcatttctgctaaaatgtaactggtggtagtgtagcttaaaccggtttccttgtcctga-tgtctga-tcccatttgtatgtgt--gcttgagtgtag
                    |||||||||||||||| || ||||| |  |||||||||||||| |||||| | ||||||||||| ||||||||| |||||||||| ||                        ||||||| |||||||  |  ||| |   ||   || | |  |||  ||||  ||| | ||||| |||||| ||| || |   |||||  || ||
--------------------TGAGCTTCGTGTTCCGGGGGAGCAGAGGTGACATCGAGGCCGGAGGCTTCCCGGGGTTCGCCCCGGAGCGCCGCGCCATGGTGAGCGT------------------------TTCTGCTTAAATgtaggttttggcatcctaaagtagatc--tttttttgttatgaatttctgactcccatctgtgtgggggggcttgtatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71448720|gb|DR829770.1|DR829770
EST:     ACATCGAGGCCGGTGGCTTCACAGGGTTCGCCCCCGAGCGCCGCACCATG                         CGAATTCATGCAGGGAGCAGGCCG
genomic: ACATCGAGGCCGGTGGCTTCACAGGGTTCGCCCCCGAGCGCCGCACCATGgtgagtgtct ... ttgagtgtagCGAATTCATGCAGGGAGCAGGCCG