1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTGTGCAAGTGGCCATAAGTCTATGTTGGATCAGAAATGTGATTTATCAGAGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAGgtttggagctggggctaatgcccgtttacatcttcaataaaattgttgtatacttgtgtgcttaatttattgttgtttctgcag
species | Zea mays |
transcript | GRMZM2G480607_T06 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAG ATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCTEST: gi|211096511|gb|FL457291.1|FL457291
genomic: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAGgtttggagct ... gtttctgcagATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCT
EST: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAG ATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCTEST: gi|28987432|gb|CB351631.1|CB351631
genomic: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAGgtttggagct ... gtttctgcagATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCT
EST: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAG ATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCTEST: gi|67016374|gb|CO445123.1|CO445123
genomic: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAGgtttggagct ... gtttctgcagATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCT
EST: AGTTGTGTTCTCAGATGTTGAAGAAAATTGATGTGTATGACATAGACAAG ATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCTEST: gi|211174474|gb|FL037930.1|FL037930
genomic: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAGgtttggagct ... gtttctgcagATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCT
EST: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACCAG ATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCT
genomic: AGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAGgtttggagct ... gtttctgcagATAAATGTGAGGTATAAGCTTGTTTCCGGCTCTCCTTCTGGTGTTGTAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGCAAGTGGCCATAAGTCTATGTTGGATCAGAAATGTGATTTATCAGAGTTGTGTTCTCAAATGTTGAAGAAAATTGATGTGTATGACATAGACAAGgtttggagctggggctaatgcccgtttacatcttcaataaaattgttgtatacttgtgtgcttaatttattgttgtttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA