Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211202480|gb|FL075815.1|FL075815EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTATATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|29130865|gb|CB381569.1|CB381569EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|32939186|gb|CF044005.1|CF044005EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|18164831|gb|BM334670.1|BM334670EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|32849974|gb|CD989655.1|CD989655EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211199915|gb|FL075798.1|FL075798EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|76281556|gb|DV021124.1|DV021124EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211202481|gb|FL075816.1|FL075816EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211199921|gb|FL075804.1|FL075804EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211199918|gb|FL075801.1|FL075801EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATTGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTAWATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211199917|gb|FL075800.1|FL075800EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|78021298|gb|DV489685.1|DV489685EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|30306731|gb|CD001404.1|CD001404EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|60399080|gb|DN231894.1|DN231894EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211199919|gb|FL075802.1|FL075802EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTATATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211202478|gb|FL075813.1|FL075813EST: CGACAAGAACCACGGCCA-ACCTGGCACTGCATCGTCGGGCGSAACTTCG GTTCTTACGTGACGCACGAGACA
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACA
EST:
gi|29946095|gb|CB815976.1|CB815976EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211202479|gb|FL075814.1|FL075814EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCAC
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCAC
EST:
gi|18181427|gb|BM382637.1|BM382637EST: GCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: GCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|29130306|gb|CB381010.1|CB381010EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|30704768|gb|CD058596.1|CD058596EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|18165144|gb|BM334983.1|BM334983EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|18171185|gb|BM341025.1|BM341025EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|31612227|gb|CD568849.1|CD568849EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|67013294|gb|CO442043.1|CO442043EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|60356545|gb|DN223518.1|DN223518EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211202477|gb|FL075812.1|FL075812EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211540674|gb|FL444170.1|FL444170EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|18170938|gb|BM340778.1|BM340778EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|5740448|gb|AI948138.1|AI948138EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|29946093|gb|CB815975.1|CB815975EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211199924|gb|FL075807.1|FL075807EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|76281555|gb|DV021123.1|DV021123EST: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTTTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
EST:
gi|211199922|gb|FL075805.1|FL075805EST: CGACAAGAACCACGGCCCAACCTGGCACTGCATCGTCGGCCGCAACTTCG GTTCCTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
genomic: CGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
219GAGAAGCACAGTATGGAGAAGGACATCGCGGAGTACATAAAGAAGGAGTTCGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACTCTAAAGCTGTCTTGCTATTCAAGTCTGGGTGATTGTCGCAGCCAATACA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
135GAGAAGCACAGTATGGAGAAGGACATCGCGGAGTACATAAAGAAGGAGTTCGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACTCTAAAGCTGTCTTGCTATTCAAGTCTGGGTGATTGTCGCAGCCAATACA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
110GAGAAGCACAGTATGGAGAAGGACATCGCGGAGTACATAAAGAAGGAGTTCGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACTCTAAAGCTGTCTTGCTATTCAAGTCTGGGTGATTGTCGCAGCCAATACA
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
72GAGAAGCACAGTATGGAGAAGGACATCGCGGAGTACATAAAGAAGGAGTTCGACAAGAACCACGGCCCCACCTGGCACTGCATCGTCGGCCGCAACTTCGgtaatgctct ... catgatgcagGTTCTTACGTGACGCACGAGACAAACTACTTTGTATATTTCTACATCGACTCTAAAGCTGTCTTGCTATTCAAGTCTGGGTGATTGTCGCAGCCAATACA