1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaagtggagaactggagtagcaccagatgaatctcgcttcttaaagagattttgcatttaagaaaaagaattagactttgcatcagaaggcggatcaacttcatcttcttttttagctgtagttgcgaaacttaatggtgggtgatctgaatttcttttgcctctggcctgacag
species | Zea mays |
transcript | GRMZM2G471805_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAG GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGEST: gi|60395803|gb|DN228673.1|DN228673
genomic: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaa ... ggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
EST: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAG GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGEST: gi|211019758|gb|FL395380.1|FL395380
genomic: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaa ... ggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
EST: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAG GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
genomic: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaa ... ggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaagtggagaactggagtagcaccagatgaatctcgcttcttaaagagattttgcatttaagaaaaagaattagactttgcatcagaaggcggatcaacttcatcttcttttttagctgtagttgcgaaacttaatggtgggtgatctgaatttcttttgcctctggcctgacag
- - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - TGGAGG