1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag
species | Zea mays |
transcript | GRMZM2G470499_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|101401541|gb|EB822450.1|EB822450
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71315889|gb|DR794631.1|DR794631
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71430040|gb|DR811090.1|DR811090
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|149012054|gb|EE042472.2|EE042472
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|148972877|gb|EE023879.2|EE023879
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71303565|gb|DR787892.1|DR787892
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA