1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag
species | Zea mays |
transcript | GRMZM2G470499_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|148995866|gb|EE035102.2|EE035102
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71436076|gb|DR817126.1|DR817126
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: AGGATCGCGGTT-GCTTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|149104235|gb|EE289671.2|EE289671
genomic: AGGATCGCGGTTGGC-TCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|89249349|gb|DY621135.1|DY621135
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGGGAGCATCCTTCTGGEST: gi|94477995|gb|EB706953.1|EB706953
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|88750189|gb|DY534330.1|DY534330
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: CGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAAACATCCTTTTGEST: gi|37422946|gb|CF649190.1|CF649190
genomic: CGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCG-AACATCCTTCTG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71771807|gb|DR969744.1|DR969744
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|148959212|gb|EE010655.2|EE010655
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|76914139|gb|DV165421.1|DV165421
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|110215668|gb|EC897566.1|EC897566
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: CCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71316884|gb|DR795129.1|DR795129
genomic: CCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|148963688|gb|EE014752.2|EE014752
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: AGGATCGCGGTTGGCTCCG-GAAGGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|148987250|gb|EE031085.2|EE031085
genomic: AGGATCGCGGTTGGCTCCGCGAA-GGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|94474665|gb|EB703623.1|EB703623
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|78087049|gb|DV515442.1|DV515442
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71763339|gb|DR961276.1|DR961276
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|50334733|gb|CO529859.1|CO529859
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|148987251|gb|EE031086.2|EE031086
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|148959211|gb|EC905317.2|EC905317
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|78124341|gb|DV542725.1|DV542725
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71423642|gb|DR806109.1|DR806109
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA