Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag

Basic information

species Zea mays
transcript GRMZM2G470499_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470499_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 3
GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactct-tgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag
      | || ||| ||||| |||||||||||||| ||||||||| ||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||     | | |  |||| |  ||  |       | | ||    || ||  |||||      || |   ||          ||| | ||||| |||            
------GTAGCGGCCGGCCGGCGCTGGACTGGCCGCGGCGGTGGAAGATCGCGGTCGGCTCGGCCAAGGGCCTCGCGTATCTGCACGAGGACTgtgagttccaccttgtgtttcctccgaaat-ctaaggtggtgtttgggaatctctaacaaaa---atataagtccctatgagagagacttgtgctttt-gttaaa---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29947640|gb|CB816761.1|CB816761
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148978505|gb|EE026185.2|EE026185
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|78112448|gb|DV530842.1|DV530842
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|149047014|gb|EE048127.2|EE048127
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148972018|gb|EE022845.2|EE022845
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148964344|gb|EE015510.2|EE015510
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|149104429|gb|EE289873.2|EE289873
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148963688|gb|EE014752.2|EE014752
EST:     AGGATCGCGGTTGGCTCCG-GAAGGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: AGGATCGCGGTTGGCTCCGCGAA-GGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71420918|gb|DR805233.1|DR805233
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148975404|gb|EE025705.2|EE025705
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71303563|gb|DR787891.1|DR787891
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|37422946|gb|CF649190.1|CF649190
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|94477154|gb|EB706112.1|EB706112
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|88757256|gb|DY541397.1|DY541397
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|101401541|gb|EB822450.1|EB822450
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|91052445|gb|EB162863.1|EB162863
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71763595|gb|DR961532.1|DR961532
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|86468915|gb|DY235285.1|DY235285
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|149111118|gb|EE294614.2|EE294614
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71315889|gb|DR794631.1|DR794631
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|101401539|gb|EB822449.1|EB822449
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71316884|gb|DR795129.1|DR795129
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71315688|gb|DR794465.1|DR794465
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71430040|gb|DR811090.1|DR811090
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|88750189|gb|DY534330.1|DY534330
EST:     CGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAAACATCCTTTTG
genomic: CGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCG-AACATCCTTCTG
EST: gi|50330456|gb|CO525582.1|CO525582
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71758981|gb|DR956918.1|DR956918
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148952545|gb|EC898375.2|EC898375
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71436076|gb|DR817126.1|DR817126
EST:     AGGATCGCGGTT-GCTTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: AGGATCGCGGTTGGC-TCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71311557|gb|DR792145.1|DR792145
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|50331964|gb|CO527090.1|CO527090
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|93284475|gb|EB676739.1|EB676739
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|149012054|gb|EE042472.2|EE042472
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|149095899|gb|EE181560.2|EE181560
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|78090522|gb|DV518896.1|DV518896
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|86467237|gb|DY233607.1|DY233607
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|149205694|gb|ES701290.1|ES701290
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148967069|gb|EE018230.2|EE018230
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148972877|gb|EE023879.2|EE023879
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|74233576|gb|DT641490.1|DT641490
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148959617|gb|EE010908.2|EE010908
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71306820|gb|DR789567.1|DR789567
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|33466391|gb|CF243440.1|CF243440
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|93017598|gb|EB643118.1|EB643118
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148950563|gb|EC896143.2|EC896143
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71303236|gb|DR787720.1|DR787720
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|110215668|gb|EC897566.1|EC897566
EST:     CCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: CCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71300889|gb|DR786474.1|DR786474
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148972876|gb|EE023878.2|EE023878
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|149012053|gb|EE042471.2|EE042471
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148935711|gb|EC879754.2|EC879754
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|148963689|gb|EE014753.2|EE014753
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71303565|gb|DR787892.1|DR787892
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: gi|71430039|gb|DR811089.1|DR811089
EST:     GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT                         GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag

- - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA