1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaagataaaagaaaatttaggccttgcatgattattagcattttgcaatgcagcttacctaggtttactgccttgataagctttcgtttatgctcctaagttgtgatttacaaggacaattttgctaccttgtag
species | Zea mays |
transcript | GRMZM2G469523_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|32837892|gb|CD977570.1|CD977570
genomic: ACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: ACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGGCGCCCAGGTGATGCAGAGATTCTGEST: gi|60352711|gb|DN219684.1|DN219684
genomic: ACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: CATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|71773386|gb|DR971290.1|DR971290
genomic: CATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: TTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|67025401|gb|CO454150.1|CO454150
genomic: TTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: GCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGCGATGCAGAGATTCTGEST: gi|24774129|gb|CA409383.1|CA409383
genomic: GCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: CTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|67025022|gb|CO453771.1|CO453771
genomic: CTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|71425858|gb|DR806940.1|DR806940
genomic: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|32846391|gb|CD986072.1|CD986072
genomic: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: TACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGGCGCCCAGGTGATGCAGAGATTCTGEST: gi|50326912|gb|CO522038.1|CO522038
genomic: TACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: AGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AEST: gi|50326912|gb|CO522038.1|CO522038
genomic: AGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtag-
EST: AGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AEST: gi|24773701|gb|CA408955.1|CA408955
genomic: AGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtag-
EST: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|5739820|gb|AI947510.1|AI947510
genomic: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|33468176|gb|CF245225.1|CF245225
genomic: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|60354871|gb|DN221844.1|DN221844
genomic: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|83278826|gb|DV942834.1|DV942834
genomic: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: GTGCTGGAGATTGTAAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTGEST: gi|74245905|gb|DT653819.1|DT653819
genomic: GTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
EST: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAG AAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
genomic: GTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaaga ... taccttgtagAAAATACCTCTGATTTTTGGTGAAAGACGCCCAGGTGATGCAGAGATTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGATTGTTAAAGCATTTGAGAAGGCTTCTGGGAAGgtatacaagataaaagaaaatttaggccttgcatgattattagcattttgcaatgcagcttacctaggtttactgccttgataagctttcgtttatgctcctaagttgtgatttacaaggacaattttgctaccttgtag
- - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAT