Sequence
atgc intronic sequence ATGC exonic sequenceTGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G468693_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g44890.1 (Oryza sativa), 5'ss of exon 5
TGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcag
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TGACATGTAAAATCCGTCTTCTGAACACACGCCAGGACACTGTGGAGTTGGCTCGCCGAGTTGAGAAGATTGGTGTTCCAGCCCTTGCTGTCCATGGAAGgtta-gttacgct---tcatacttttgagtt--------ctgatagaaaattgtactcatcc--actcta-ctttataa-tgtgcaatttaccatctttctctctccaat-tgtcca--------------------------------------------------------------------------
upper sequence: GRMZM2G468693_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G36840.1 (Glycine max), 5'ss of exon 5
TGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatga--cacatag-aattgtatttttgagttgtga--tagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcag
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TAACATGTAAGATTCGACTTCTAAAATCACCACATGATACCGTGGAATTAGCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAGgtaatcattctcatatcaatcaacctattagatggttacatagacatattgccattaggatttatcataattctatcatt-gatccttctaataaaagatt-----------------------------------------------------------------------------------------------
upper sequence: GRMZM2G468693_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G23820.3 (Glycine max), 5'ss of exon 5
TGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcag
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TAACATGTAAGATTCGACTTCTAAAATCGCCACATGATACCGTGGAATTAGCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAGgtaaaatctccaagtcctgtcccttt---tcctggacctttgtttctctagtgtgaacaaa--tattgtcattttgttttcatg-aggcagttattctcattgatg-------------------------------------------------------------------------------------
upper sequence: GRMZM2G468693_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv00s2044g00010.t01 (Vitis vinifera), 5'ss of exon 3
TGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcag
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TCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTGAGAAAACTGGTGTTGCTGCTCTGGCTGTTCATGGAAGgtaccttaactctaatccacacaatctatttagga---------agagatttaa--------ttgttccagttccagaagattccactca-----cagcat----cagctatcaca-taactctctc----------------------------------------------------------------
upper sequence: GRMZM2G468693_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv00s2201g00010.t01 (Vitis vinifera), 5'ss of exon 3
TGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcag
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TCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTGAGAAAACTGGTGTTGCTGCTCTGGCTGTTCATGGAAGgtaccttaactctaatccacacaatctatttagga---------agagatttaa--------ttgttccagttccagaagattccactca-----cagcat----cagctatcgca-taactctctc----------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78022286|gb|DV490673.1|DV490673EST: GCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAG AAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGA
genomic: GCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatgacac ... gaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG