1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTTATGGTGATAAGGTGCCACCAAGGGAACATGGAAATTACTTCAGCTATTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgcaataatcatttttttctcttaagtgtattggaaagatgctctgatatttttcaaaacgctacagtaaaatttccattacataagactttg...
species | Zea mays |
transcript | GRMZM2G468260_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|67028741|gb|CO457490.1|CO457490
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTTTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|8103125|gb|AW927785.1|AW927785
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTTTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|18179901|gb|BM381111.1|BM381111
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|78178991|gb|DV549364.1|DV549364
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTTTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|93012750|gb|EB638270.1|EB638270
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAG ATTATGATTTTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|211295922|gb|FL460683.1|FL460683
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTTTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|211131422|gb|FK982405.1|FK982405
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTTTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|50337985|gb|CO533111.1|CO533111
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|7844561|gb|AW787783.1|AW787783
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTTTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|71756382|gb|DR954319.1|DR954319
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCCEST: gi|71444055|gb|DR825105.1|DR825105
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
EST: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAG ATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
genomic: TTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgc ... taaattgcagATTATGATTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACACCATTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTATGGTGATAAGGTGCCACCAAGGGAACATGGAAATTACTTCAGCTATTTTTCCCCATCTGCTGAAGATGAAGATGTCTGTCCAACTTGTCTTGAAGgtattatcgcaataatcatttttttctcttaagtgtattggaaagatgctctgatatttttcaaaacgctacagtaaaatttccattacataagactttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG