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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGAACATGgtaagagttcaattcacatactgttacaatgaactgtgcttcttttgttgaaatcctgagtattgatgcatttgttttccag

Basic information

species Zea mays
transcript GRMZM2G466281_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211250318|gb|FL201841.1|FL201841
EST:     CCGCTATGGTTTSCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCGCTATGGTTC-CCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|101388019|gb|EB816024.1|EB816024
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|76933447|gb|DV173462.1|DV173462
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|78108358|gb|DV526776.1|DV526776
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|76284393|gb|DV023961.1|DV023961
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|211250321|gb|FL201844.1|FL201844
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|211250315|gb|FL201838.1|FL201838
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATTCAGCATTCCTTGGCTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACAT-CAGCATTCCTTGGCTT
EST: gi|148930548|gb|EE285169.2|EE285169
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|148948015|gb|EC893516.2|EC893516
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|149095953|gb|EE181619.2|EE181619
EST:     CCCGCTACGCTTCCCACCGAACATG                         ATTACAATGAC
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGAC
EST: gi|211250319|gb|FL201842.1|FL201842
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|149085392|gb|EE174899.2|EE174899
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|88756189|gb|DY540330.1|DY540330
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|211250320|gb|FL201843.1|FL201843
EST:     CCCGCTATGGTTTCCACNNAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCC
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCC
EST: gi|88756155|gb|DY540296.1|DY540296
EST:     CCCGCTATGGTTCCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
EST: gi|211250316|gb|FL201839.1|FL201839
EST:     CCCGCTATGGTKNCCACCGAACATG                         ATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
genomic: CCCGCTATGGTTCCCACCGAACATGgtaagagttc ... tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT