1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGTACCCGCTGCTCGCCGACCACATGTCCGATTACATGGCCAAGACGCTCTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgcttcactgctgtttgaattgcttgtcgacttggcaattggctcccagtcgctggtacgtgggcacgtggccatgcctgtaaaggggagatgcgcactaactggacgggatttgcaatggtgtgtgctgttgttgcag
species | Zea mays |
transcript | GRMZM2G464137_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|148931973|gb|EC875233.2|EC875233
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|148962543|gb|EE013418.2|EE013418
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|71432514|gb|DR813564.1|DR813564
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|148969592|gb|EE020430.2|EE020430
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|76913361|gb|DV165093.1|DV165093
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|76292759|gb|DV032327.1|DV032327
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|78114422|gb|DV532811.1|DV532811
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|76011769|gb|DT938939.1|DT938939
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|149048896|gb|EE048395.2|EE048395
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|148930196|gb|EC872600.2|EC872600
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|148938568|gb|EC882889.2|EC882889
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|149080185|gb|EE169203.2|EE169203
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|149100125|gb|EE186180.2|EE186180
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTGEST: gi|71430317|gb|DR811367.1|DR811367
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
EST: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAG TTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
genomic: CTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgct ... gttgttgcagTTGCTAAGTACTCTGCGAACGTGGAGATGTGTAGGCTCACGGAGCAAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTACCCGCTGCTCGCCGACCACATGTCCGATTACATGGCCAAGACGCTCTTCTTCACCTCCCTCCTCTATAACAATACCACGGATCATAAGAACGGAGgtgagctgcttcactgctgtttgaattgcttgtcgacttggcaattggctcccagtcgctggtacgtgggcacgtggccatgcctgtaaaggggagatgcgcactaactggacgggatttgcaatggtgtgtgctgttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC