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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCTCTCTGGGCTCAATCTCGAGGGTGAAATCTCAGCGGCCATCGGGAGTCTGCAACGTCTTGTCTCAATgtagtggcgctgcattgtttcctcatgaactatcagatgctgaactgtgcttgacattttttttcacggcgtgttggtttgtgtctag

Basic information

species Zea mays
transcript GRMZM2G463904_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211153833|gb|FL430118.1|FL430118
EST:     GAGGGTGAAATCTCAGCGGCCATCGGGAGTCTGCAACGTCTTGTCTCAAT                         CGATTTGAAGTCGAATGGACTCTCTGGACAGATCCCCGATGAGATTGGTGA
genomic: GAGGGTGAAATCTCAGCGGCCATCGGGAGTCTGCAACGTCTTGTCTCAATgtagtggcgc ... ttgtgtctagCGATTTGAAGTCGAATGGACTCTCTGGACAGATCCCCGATGAGATTGGTGA
EST: gi|149080168|gb|EE169186.2|EE169186
EST:     GAGGGTGAAATCTCAGCGGCCATCGGGAGTCTGCAACGTCTTGTCTCAAT                         CGATTTGAAGTCGAATGGACTCTCTGGACAGATCCCCGATGAGATTGGTGA
genomic: GAGGGTGAAATCTCAGCGGCCATCGGGAGTCTGCAACGTCTTGTCTCAATgtagtggcgc ... ttgtgtctagCGATTTGAAGTCGAATGGACTCTCTGGACAGATCCCCGATGAGATTGGTGA