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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCCAGATGTTGAGCGCCCTGCACCCCCAAAGTACTCTGAGCGATTATCCCCATCAGTCAATGCATATTTGTCGGAGGCTTCAAGGCATGAAATAAGGgtaattgttctccagccctagttgacgtggctaggaattggataggaattagtggcttagagcatcttcaacagcctccaaacagtattcctaaaacctc...

Basic information

species Zea mays
transcript GRMZM2G462803_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G462803_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g21080.1 (Oryza sativa), 5'ss of exon 6
GAGCCCAGATGTTGAGCGCCCTGCACCCCCAAAGTACTCTGAGCGATTATCCCCATCAGTCAATGCATATTTGTCGGAGGCTTCAAGGCATGAAATAAGGgta-attgttctccagccctagttgacgtggctaggaattggataggaattagtggcttagagcatcttcaacagcctccaaacag-tattcctaaaacctc---
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GAGCCCTGATGCTGAGCGCCCTGCATCTCCAAAGTACTCCGATCGATTATCCCCATCAGTTAATGCATATTTGTCTGAGGCATCACGCCATGAAATAAGGgtatgttggtgcattattttagtgagcattgtcacatatttgataagcttt-----cttggagtatctttgttagagtcaggttggatatgtcttgagtaggttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67031132|gb|CO459881.1|CO459881
EST:     CCCCATCAGTCAATGCATATTTGTCGGAGGCTTCAAGGCATGAAATAAGG                         CCTCAGGGAACACCAGAAAATGGGTACATGTGGAACAGGGTTAGCCCTCAA
genomic: CCCCATCAGTCAATGCATATTTGTCGGAGGCTTCAAGGCATGAAATAAGGgtaattgttc ... tttaatgtagCCTCAGGGAACACCAGAAAATGGGTACATGTGGAACAGGGTTAGCCCTCAA