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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGACCTGGGGAAACAACTATTGGGCAGgtgggtttgcctacttagtaaatttcttgctgtgctttcctgcatcattacatatttacgtttatctataatgcgtctaccatcaagacctggcattgct...

Basic information

species Zea mays
transcript GRMZM2G461569_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211467326|gb|FK982254.1|FK982254
EST:     GACAAAACCGTGACAGACCTCATGGACCTGGGGAAACAACTATTGGGCAG                         GAGACAAGTTCTTCCAGCTGTTCCATACCTTTTACATACTGTGCAGGTGTT
genomic: GACAAAACCGTGACAGACCTCATGGACCTGGGGAAACAACTATTGGGCAGgtgggtttgc ... tgcctaccagGAGACAAGTTCTTCCAGCTGTTCCATACCTTTTACATACTGTGCAGGTGTT
EST: gi|211090508|gb|FK961025.1|FK961025
EST:     GACAAAACCGTGACAGACCTCATGGACCTGGGGAAACAACTATTGGGCAG                         GAGACAAGTTCTTCCAGCTGTTCCATACCTTTTARCATACTGTGCAGGT
genomic: GACAAAACCGTGACAGACCTCATGGACCTGGGGAAACAACTATTGGGCAGgtgggtttgc ... tgcctaccagGAGACAAGTTCTTCCAGCTGTTCCATACCTTTTA-CATACTGTGCAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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ATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGACCTGGGGAAACAACTATTGGGCAGgtgggtttgcctacttagtaaatttcttgctgtgctttcctgcatcattacatatttacgtttatctataatgcgtctaccatcaagacctggcattgct

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