Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATTTGGTTTCTCTTGTGGGATACTGCATTTCCAATGACCAAAGGTTACTTGTATACGACTTTGTTTCTAATAACACGCTGCATTATCATCTTCACGgtatgttatagcctctttctaatcctttgcaagagtattcccatcttctgccagtacaaaaattgaactgaactgcaatctcag

Basic information

species Zea mays
transcript GRMZM2G458548_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458548_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g01040.1 (Oryza sativa), 5'ss of exon 2
CGCCATTTGGTTTCTCTTGTGGGATACTGCATTTCCAATGACCAAAGGTTACTTGTATACGACTTTGTTTCTAATAACACGCTGCATTATCATCTTCACGgtatgttatagcctctttctaatcctttgcaagagtattcccatcttctgccagtacaaaa----------attgaactgaactgcaatctcag
|| ||| |||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||  |||||||||| || ||||||||||||||||||||| | || |||||| |||    | | || |   ||| |  |||||||| |||| |||           ||||||   | ||| |||| |||
CGTCATCTGGTATCTCTTGTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAACACCCTTCATTATCATCTTCACGgtatggtttaacctcttgcta-cattgtacatggccatttcgttcttctgcaagtagaaactgaaacatgtattgaatcaacctgtaatcacag

upper sequence: GRMZM2G458548_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G14310.1 (Glycine max), 5'ss of exon 2
CGCCATTTGGTTTCTCTTGTGGGATACTGCATTTCCAATGACCAAAGGTTACTTGTATACGACTTTGTTTCTAATAACACGCTGCATTATCATCTTCACGgtatg-ttatagcctctttctaatcctttgcaagagt--attcccatcttctgccagtacaaaaattgaactgaactgcaatct-cag
||||||||||||||||| |||||||||||||||    |   |  |||  ||||||| || |||| |||  |||| || |  ||  ||| |||||| || ||||    || | |    |  ||||   |||    |||  |||   ||   ||   | |  |  || |||     | || ||| | |||
CGCCATTTGGTTTCTCTGGTGGGATACTGCATTGAAGACAGCAGAAGACTACTTGTCTATGACTATGTCCCTAACAATAACCTTTATTTTCATCTACATGgtaaaactacatctgagtgataatagattgtttcagtttattttgattgactttgattgtattaactgat----attgtaatttgcag

upper sequence: GRMZM2G458548_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G23180.1 (Glycine max), 5'ss of exon 2
CGCCATTTGGTTTCTCTTGTGGGATACTGCATTTCCAATGACCAAAGGTTACTTGTATACGACTTTGTTTCTAATAACACGCTGCATTATCATCTTCACGgtatg-ttatagcctctttctaatcctttgcaagagt--attcccatcttctgccagtacaaaaattgaactgaactgcaatct-cag
||||||||||||||| | |||||||||||||||    |  || ||||  ||||||| || |||| |||  |||| || || ||  ||| |||||| || ||||    |||| |    |  |||    |||    |||  |||   ||   ||   | |  |  || ||||    | |  ||| | |||
CGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACAACAAAAGACTACTTGTCTATGACTATGTCCCTAACAATACCCTTTATTTTCATCTACATGgtaaaactatatctgagtgataaaagattgtttcagttcattttgattgactttgattgtattaactgaa----attataatttgcag