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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCTTGGGGATGAGgtagtatctcaaccataaacatgaatgtttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctaggcattggtgggagaagc...

Basic information

species Zea mays
transcript GRMZM2G458087_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458087_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 2
ATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCTTGGGGATGAGgtagtatctcaaccataaacatgaatgtttttttacctttcagactcaagcaatatttttatggatcttcctttttcatctaggcattggtgggagaagc
||  |||| |||| || |||  |||| || || |||||||||||||| |||||||| |||||  | || || || ||||| ||||||| ||| |||||||||| ||||       |||        |||||  |       |  | |||    |||| | |  ||    || ||   |   | ||              
ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATCACAAGTTGGCCTTACGTCTTCATCCAGACAAGAATCCTGGAGATGAGgtaggatcttgtttccaaat-------tttttccat------ggattaagtgccatttgtctcaattgagctgttatgtgatgtcag-------------