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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAAACTGGATGCCAGCTGCTCTCAAGATGCCCCAGGATGAGCTCATTAACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGGgtatgttatgtcttttctatgttttggttatactgttatctcctgctgttcatctcattcaatcttttaatattttccatcgctgttttcccagtcttccgatgtctatgcactaattgaattcttattaattgctgcag

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 5'ss of exon 1
TTTTAAACTGGATGCCAGCTGCTCTCAAGATGCCCCAGGATGAGCTCATTAACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGGgtatgttatgtc---ttttctatgttttggttatact--gttatctcctgctgttcatctcattcaatcttttaa-tattttccatcgctgttttcccagtcttccgatgtctatgcactaattgaattcttattaattgctgcag
||||||  |||||||| |||||||||||||||||  |||||||| | || || ||||||||||||||||| |  ||||| |||||||||||| ||||||||| ||||   |    | || |||||||  | | | ||   || |  | || ||  |||||||||   | ||  || |  |     | |   |  | ||| |                                             
TTTTAAGTTGGATGCCGGCTGCTCTCAAGATGCCAGAGGATGAGTTGATCAATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcctttccatcttttatgtttctgctcttctcaattgttccttgttgc-catctcattttttgttccaagtcatacttgtggaaataatgccaat---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91051041|gb|EB161459.1|EB161459
EST:     AACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGG                         GCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCC
genomic: AACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGGgtatgttatg ... attgctgcagGCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCC
EST: gi|78105551|gb|DV523969.1|DV523969
EST:     AACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGG                         GCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCC
genomic: AACCATGCAGGCCTTGATTCTGTGGTCTACCTACGGATATACGTAACAGGgtatgttatg ... attgctgcagGCTCAAGATATTTGTTCCAATTACAGTTCTGGCTTTTCTTGTACTGGTCCC