Sequence
atgc intronic sequence ATGC exonic sequenceTCAAGGGGCCCGTTCGCGAGGGTGACATCCTCACCCTGCTCGAGTCCGAGAGGGAGGCCAGGAGGCTGCGCTGAAGCCCTAGCGTTCTTGGTGGGCTCTTgtatggtctttggtgtcttggaatttgtgctatgtttgaacttctgtgaccctgttttaagagtagtaagcctggttataagattgcagttttgtttatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G455828_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv08s0007g07210.t01 (Vitis vinifera), 5'ss of exon 2
-------------------------------TCAAGGGGCCCGTTCGCGAGGGTGACATCCTCACCCTGCTCGAGTCCGAGAGGGAGGCCAGGAGGCTGCGCTGAAGCCCTAGCGTTCTTGGTGGGCTCTTgtatggtctttggtgtcttggaatttgtgctatgtttgaacttctgtgaccctgttttaagagtagtaagcctggttataagattgcagttttgtttatc
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GATGATCAGAATAGGTTTATTATGAGGAATGTGAAGGGACCAGTCAGAGAAGGAGACATCCTCACCCTGCTCGAGTCTGAGAGGGAGGCCAGAAGGTTGCgttgatgggtt--catctttgtt---cccacatccatattttggtggctcg-attatgagttttgtagtggcagctagtatatgactatgactgttttatcctgag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211020060|gb|FL177486.1|FL177486EST: AGGGAGGCCAGGAGGCTGCGCTGAAGCCCTAGCGTTCTTGGTGGGCTCTT GGCCGTTGGTGAGGCGCGGCCTGGCTCCCGGGCGACAGACGGCGAGGCGGC
genomic: AGGGAGGCCAGGAGGCTGCGCTGAAGCCCTAGCGTTCTTGGTGGGCTCTTgtatggtctt ... tatcggcaagGGCCGTTGGTGAGGCGCGGCCTGGCTCCCGGGCGACAGACGGCGAGGCGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAAGGGGCCCGTTCGCGAGGGTGACATCCTCACCCTGCTCGAGTCCGAGAGGGAGGCCAGGAGGCTGCGCTGAAGCCCTAGCGTTCTTGGTGGGCTCTTgtatggtctttggtgtcttggaatttgtgctatgtttgaacttctgtgaccctgttttaagagtagtaagcctggttataagattgcagttttgtttatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG