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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATCAAGCGCAACGAGGTGGCGCTCGGCGCCAGCGACGCCATCAACGAGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgtttttttttttttgcgtttgcacaatgccgcacctgtattggaccacggctactactctcgtagtccactgtttttaactctgaggagcatagcc...

Basic information

species Zea mays
transcript GRMZM2G455642_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443460|gb|DR824510.1|DR824510
EST:     AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG                         GAGGTCCTCATGGGCAAGGACGAGTTCTTCCTGTCGTTCCGGGGAGAACGC
genomic: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgttttt ... gcgcacgcagGAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGG-AGAACGC
EST: gi|9255240|gb|BE345708.1|BE345708
EST:     AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG                         GAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGGAGAACGCC
genomic: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgttttt ... gcgcacgcagGAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGGAGAACGCC
EST: gi|9255369|gb|BE345837.1|BE345837
EST:     AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG                         GAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGGAGAACGCC
genomic: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgttttt ... gcgcacgcagGAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGGAGAACGCC