1 5' 3' | 2 5' 3' | 3 5' 3' |
CTACATCAAGCGCAACGAGGTGGCGCTCGGCGCCAGCGACGCCATCAACGAGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgtttttttttttttgcgtttgcacaatgccgcacctgtattggaccacggctactactctcgtagtccactgtttttaactctgaggagcatagcc...
species | Zea mays |
transcript | GRMZM2G455642_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG GAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGGAGAACGCCEST: gi|71443460|gb|DR824510.1|DR824510
genomic: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgttttt ... gcgcacgcagGAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGGAGAACGCC
EST: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG GAGGTCCTCATGGGCAAGGACGAGTTCTTCCTGTCGTTCCGGGGAGAACGCEST: gi|9255369|gb|BE345837.1|BE345837
genomic: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgttttt ... gcgcacgcagGAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGG-AGAACGC
EST: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG GAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGGAGAACGCC
genomic: AGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgttttt ... gcgcacgcagGAGGTCCTCATGGGCAAGGACGAGTTCTTCCGGTCGTTCCGGGAGAACGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACATCAAGCGCAACGAGGTGGCGCTCGGCGCCAGCGACGCCATCAACGAGTTTGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtgcgtttttttttttttgcgtttgcacaatgccgcacctgtattggaccacggctactactctcgtagtccactgtttttaactctgaggagcatagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcacc