1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatttaaaacatctcttttgttgatgaacatttgttagcctgtactgtctgagagaagaagaagaaggaaaaaaaaaaaccgagctgtgacaatgagtgcgtgcgtgcgttcttgctcctcgcacaggactctccag
species | Zea mays |
transcript | GRMZM2G454928_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG GACTCTCCCGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACAEST: gi|78022296|gb|DV490683.1|DV490683
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... gactctccagG--T--------ACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
EST: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGGACTCTCCAGEST: gi|71323819|gb|DR798581.1|DR798581
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTT-C-C-G------C-Ggtacgtaatt ... g
EST: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG GTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACAGCCCTTCGCTEST: gi|78109734|gb|DV528150.1|DV528150
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... gactctccagGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACAGCCCTTCGCT
EST: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGGACTCTCCAGEST: gi|78109735|gb|DV528151.1|DV528151
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTT-C-C-G------C-Ggtacgtaatt ... g
EST: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCG GACTCTCCAGGTACTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
genomic: AATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatt ... gactctccagG--T----A----CTCCCAGAACCTGGGTCTGCTGGTGCCCTTCTTCGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGATTTCACTCCGGGAATATACACCGAAGACTGCTTGTTCGAGGACCCGACGATCAAGTTCCGCGgtacgtaatttaaaacatctcttttgttgatgaacatttgttagcctgtactgtctgagagaagaagaagaaggaaaaaaaaaaaccgagctgtgacaatgagtgcgtgcgtgcgttcttgctcctcgcacaggactctccag
- - - - - - - - - - - - CGAAGA