Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTTTTTGAGTACCAGTGATGCAAAGGGACACAAGCTCTAGCGATGTTTCTGCTTCTCATGTAGGACGTGTAAGACGTCGCAAACATCCAACTGAGgttagtaatttcttgttccttttgctctttattgcgctctgctctctctctctctctctctctctagatttcagctaatacactgaagcatggttcaagctagagcagcagcctgtttcaggtgctcttttacgtactaatcttggtcattttttcag

Basic information

species Zea mays
transcript GRMZM2G452529_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55360.4 (Oryza sativa), 5'ss of exon 2
TAACTTTTTGAGTACCAGTGATGCAAAGGGACACAAGCTCTAGCGATGTTTCTGCTTCTCATGTAGGACGTGTAAGACGTCGCAAACATCCAACTGAGgttagtaatttcttgttccttttgctctttattgcgctctgctctctctctctctctctctctctagatttcagctaatacactgaagcatggttcaagctagagcagcagcctgtttcaggtgctcttttacgtactaatcttggtcattttttcag
       |  | || ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||  || |  || | || ||| ||||||||  |  ||||| |     | |  |   || | ||   | |      | ||   | ||||  | |  ||| |   | |||       |  |  ||     |   |                                                     
------ATCAAATAGCAGCGATGGAAAGGGACACAAGCTCTAGTGATGTTTCTGCTTCTCATGTAGGACGTGCCAGGCAGCGAAGACGTCCTACTGAGgtaggctatttcat-----tatgacaaattttagcaaacagaaaggccccttggtttctcagtatgcattgcc-ttcatatctccgtgtttatttatttttgtggt----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211016481|gb|FL252308.1|FL252308
EST:     TTTCTGCTTCTCATGTAGGACGTGTAAGACGTCGCAAACATCCAACTGAG                         GCTACCACAGATGGGAATAGAGCTAATGGACAGCCATTGCTTGTCAATGAT
genomic: TTTCTGCTTCTCATGTAGGACGTGTAAGACGTCGCAAACATCCAACTGAGgttagtaatt ... attttttcagGCTACCACAGATGGGAATAGAGCTAATGGACAGCCATTGCTTGTCAATGAT