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CCCGACAAACCAGGGTGATAAGGATAGTGCGGATGACAAGGGTCAAGTCAAAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccatagttttctctttaatctaagcaaatagctcagtttaactcatctatcacactagtcattctggacatccttcacctttttttgtaatggct...
species | Zea mays |
transcript | GRMZM2G451366_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGCATGGCGACAATTTTGGTAACCTGCTGGCAEST: gi|91869089|gb|EB400264.1|EB400264
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|211228910|gb|FK998504.1|FK998504
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|211228908|gb|FK998502.1|FK998502
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGCATGGCGACAATTTTGGTAACCTGCTGGCAEST: gi|91052384|gb|EB162802.1|EB162802
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|211226848|gb|FK998488.1|FK998488
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGCATGGCGACAATTTTGGTAACCTGCTGGCAEST: gi|211226850|gb|FK998490.1|FK998490
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTCACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACNATTTTGGTAACCTGCTGGCAEST: gi|148957547|gb|EC903641.2|EC903641
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AATGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|101402114|gb|EB822664.1|EB822664
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|211228907|gb|FK998501.1|FK998501
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGCATGGCGACAATTTTGGTAACCTGCTGGCAEST: gi|149084005|gb|EE173399.2|EE173399
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|149109140|gb|EE190033.2|EE190033
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGAEST: gi|71326877|gb|DR800096.1|DR800096
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|211228909|gb|FK998503.1|FK998503
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AGGTGTACTGACTGAGCTGGAGAAAGT-GCTTGTGCACGACCAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGAACA-TTTTGGTAACEST: gi|211228901|gb|FK998495.1|FK998495
genomic: AGGTGTACTGACTGAGCTGGAGAA-GTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGA-CAATTTTGGTAAC
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|211226849|gb|FK998489.1|FK998489
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCEST: gi|148933788|gb|EC877732.2|EC877732
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGC
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|50335646|gb|CO530772.1|CO530772
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCAEST: gi|71440389|gb|DR821439.1|DR821439
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
EST: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCA TATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
genomic: AAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccata ... cttcatgcagTATCCAGTGTACTTTGCTTTGGATGACGACAATTTTGGTAACCTGCTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGACAAACCAGGGTGATAAGGATAGTGCGGATGACAAGGGTCAAGTCAAAGGTGTACTGACTGAGCTGGAGAAGTTGCTTGTGCACGAACAAGTTCCAgtaagccatagttttctctttaatctaagcaaatagctcagtttaactcatctatcacactagtcattctggacatccttcacctttttttgtaatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT