1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAGCCGACTTTGTGGTTAGTCCATTCTCTTCCGGCGGGATACGTTGCGGACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGgtaagtgtgcccctgtctgagagggcttccgagcgttcccccactttcgtttcggcgaaattcgtcgcatttccgttccttccgctgatcaaatgccttcgttcccagtggttcttgtag
species | Zea mays |
transcript | GRMZM2G447433_T08 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTG AGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGAEST: gi|71439499|gb|DR820549.1|DR820549
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGgtaagtgtgc ... gttcttgtagAGCGGTCGTGTCGTCCGAGCGTTGATCTGAACCAGCGCAGTTTATCAGGGA
EST: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGTGGTTCTTGTAGEST: gi|78114830|gb|DV533218.1|DV533218
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGA--T---T-TGG-----GT-Ggtaagtgtgc ...
EST: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGTGGTTCTTGTAGEST: gi|101397320|gb|EB820583.1|EB820583
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGA--T---T-TGG-----GT-Ggtaagtgtgc ...
EST: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGTGGTTCTTGTAG
genomic: ACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGA--T---T-TGG-----GT-Ggtaagtgtgc ...
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCCGACTTTGTGGTTAGTCCATTCTCTTCCGGCGGGATACGTTGCGGACCACTTCGCTCAGCTGCTCGCGACGGCGGCTTGTACCCTGATTTGGGTGgtaagtgtgcccctgtctgagagggcttccgagcgttcccccactttcgtttcggcgaaattcgtcgcatttccgttccttccgctgatcaaatgccttcgttcccagtggttcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT