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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTCTCAATTATGCTGAAGTGGTCTCTCTCATTAAGGATGAATCGGGGGAGAGAATCATTGGTGCACGCGTCCGTGACACACTATCAGGTAGAATAAAgtatgtcctatctctactcactatataaaatatccacctcttagagtcgttcaagctatctcttttccttgatagttatgtgtttctttcctccatatta...

Basic information

species Zea mays
transcript GRMZM2G446108_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446108_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g14790.1 (Oryza sativa), 5'ss of exon 2
----------CTGTTCTCAATTATGCTGAAGTGGTCTCTCTCATTAAGGATGAATCGGGGGAGAGAATCATTGGTGCACGCGTCCGTGACACACTATCAGGTAGAATAAAgtatgtcctatctctactcactatataaaatatccacctcttagagtcgttcaagctatctcttttccttgatagttatgtgtttctttcctccatatta
          || |||| ||||||||||||||||| || ||||||||||||||||| || || || || |||||||||||  ||||||| || |||||||||||||||||||||||| | ||||| |   || |||| | |     |   ||||| | ||  ||   ||  ||||    | ||  | |||| ||| || | ||   ||  
GTTGGTGCAGCTATTCTTAATTATGCTGAAGTGGTATCCCTCATTAAGGATGAATCTGGAGAAAGGATTATTGGTGCACGGATCCGTGATACGCTATCAGgtagaataaagtatgtctt-tctcttc---ctttatacagtggaggcacattagaat-gtgtaattcatacctttc---taatgatcatgtattttttacttcagcat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89106200|gb|DY576417.1|DY576417
EST:     GAGAGAATCATTGGTGCACGCGTCCGTGACACACTATCAGGTAGAATAAA                         GTAAGGAGTTTGAAACCTTCGCAAAGGTGGTTGTTAATGCAGCAGGACCAT
genomic: GAGAGAATCATTGGTGCACGCGTCCGTGACACACTATCAGGTAGAATAAAgtatgtccta ... tgtgtgtcagGTAAGGAGTTTGAAACCTTCGCAAAGGTGGTTGTTAATGCAGCAGGACCAT
EST: gi|19272453|gb|BM888709.1|BM888709
EST:     GAGAGAATCATTGGTGCACGCGTCCGTGACACACTATCAGGTAGAATAAA                         GTAAGGAGTTTGAAACCTTCGCAAAGGTGGTTGTTAATGCAGCAGGACCAT
genomic: GAGAGAATCATTGGTGCACGCGTCCGTGACACACTATCAGGTAGAATAAAgtatgtccta ... tgtgtgtcagGTAAGGAGTTTGAAACCTTCGCAAAGGTGGTTGTTAATGCAGCAGGACCAT
EST: gi|22491283|gb|BU051206.1|BU051206
EST:     GAGAGAATCATTGGTGCACGCGTCCGTGACACACTATCAGGTAGAATAAA                         GTAAGGAGTTTGAAACCTTCGCTAAGGTGGTTGTTAATGCAGCAGGACCAT
genomic: GAGAGAATCATTGGTGCACGCGTCCGTGACACACTATCAGGTAGAATAAAgtatgtccta ... tgtgtgtcagGTAAGGAGTTTGAAACCTTCGCAAAGGTGGTTGTTAATGCAGCAGGACCAT