1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCAACGCCCTACAGGGTAGCCTGGGACTACTACATGAGGTCGAACGAGAACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgtatgggtcgactgtctctttacgctcagacagacagcatgactgtctctctttctgcatgcag
species | Zea mays |
transcript | GRMZM2G445478_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATAC GTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGGEST: gi|148965941|gb|EE016855.2|EE016855
genomic: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgt ... ctgcatgcagGTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
EST: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATAC GTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGGEST: gi|149090684|gb|EE180010.2|EE180010
genomic: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgt ... ctgcatgcagGTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
EST: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATAC GTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGGEST: gi|149100003|gb|EE186056.2|EE186056
genomic: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgt ... ctgcatgcagGTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
EST: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATAC GTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGGEST: gi|149069903|gb|EE158301.2|EE158301
genomic: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgt ... ctgcatgcagGTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
EST: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATAC GTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGGEST: gi|148972705|gb|EE023666.2|EE023666
genomic: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgt ... ctgcatgcagGTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
EST: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATAC GTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGGEST: gi|149079355|gb|EE168332.2|EE168332
genomic: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgt ... ctgcatgcagGTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
EST: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATAC GTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGGEST: gi|148967220|gb|EE018415.2|EE018415
genomic: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgt ... ctgcatgcagGTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
EST: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATAC GTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
genomic: ACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgt ... ctgcatgcagGTAAAGCAGCACGGGATCGCCGTCTTCCTGATGCCATCTGGGATGCTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAACGCCCTACAGGGTAGCCTGGGACTACTACATGAGGTCGAACGAGAACCACACCTTCGAGATCAAAGCGTGGGAGGACGCGGCAGAGATGGAATACgtacgtacgtatgggtcgactgtctctttacgctcagacagacagcatgactgtctctctttctgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA