1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGCGAGGCCTACCCTGCGTACGACGACTTCCTCGCGCTCCCCGCCTTCGTTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgcccttgccgtctttcgtttttccttccgttgtttcggtgaaggtcttcgactctggcgctgaacgctagcgcgtagcttgctgccgacaaa...
species | Zea mays |
transcript | GRMZM2G444643_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAG TGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAATEST: gi|211233878|gb|FL279446.1|FL279446
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAAT
EST: TTCTCTTCTWCCCTACCGTCCGCTTYCTCCTCGACCGCTTCGTCTTCAAG TGGGTTGCAATGAGGCTTATACATGGGCAGGGGACATCAGAGAGCTAATAAEST: gi|211233880|gb|FL279448.1|FL279448
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATACATGGGCAGGG-ACATCAGAGAGCTAATAA
EST: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAG TGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAATEST: gi|211233879|gb|FL279447.1|FL279447
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAAT
EST: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAG TGGGT-GCAATGAGGCTTATAACATGGGCAGGGACATCAGAGAGCTAATAAEST: gi|211231827|gb|FL279442.1|FL279442
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATA-CATGGGCAGGGACATCAGAGAGCTAATAA
EST: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAG TGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAATEST: gi|71767992|gb|DR965929.1|DR965929
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAAT
EST: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAG TGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAATEST: gi|211231825|gb|FL279440.1|FL279440
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAAT
EST: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAG TGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAATEST: gi|78104263|gb|DV522681.1|DV522681
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAAT
EST: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAG TGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAATEST: gi|78086491|gb|DV514884.1|DV514884
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAAT
EST: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAG TGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAAT
genomic: TTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgc ... actgttttagTGGGTTGCAATGAGGCTTATACATGGGCAGGGACATCAGAGAGCTAATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCGAGGCCTACCCTGCGTACGACGACTTCCTCGCGCTCCCCGCCTTCGTTCTCTTCTTCCCTACCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCAAGgtgcgactgcccttgccgtctttcgtttttccttccgttgtttcggtgaaggtcttcgactctggcgctgaacgctagcgcgtagcttgctgccgacaaa
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