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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGAAGTTCCTTGAACTTAGTTTTTCAAGCCACTCAACCGCTAGAAGGCTATCAATATGCGGGCATTCACTCAATACGGATTGTCTGCGTTTTTTGGgtaagctcaaaacatcagctgtatttcataaattgtttcacttccattgtattgtactaccttttctgttcatttatttgggatgtgtcatcttcag

Basic information

species Zea mays
transcript GRMZM2G441397_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G441397_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g59540.1 (Oryza sativa), 5'ss of exon 4
TTTGGGAAGTTCCTTGAACTTAGTTTTTCAAGCCACTCAACCGCTAGAAGGCTATCAATATGCGGGCATTCACTCAATACGGATTGTCTGCGTT-TTTTGGgtaag----ctcaaaa--catcagctgtatttcataaattgtttcacttccattgtattgtactaccttttctgttcatttatttgggatgt-gtcatcttcag
 |||| |||||||||||||| ||||| |||||||||||  | ||||||||||||||| | || |||||||   |||| | ||| ||  |||| | ||||||||| |    ||||     ||  | || | ||  | |  | || | |      |     | || |||    || ||   || || |   |    ||   ||    
-TTGGCAAGTTCCTTGAACTCAGTTTCTCAAGCCACTCTGCTGCTAGAAGGCTATCAGTTTGTGGGCATTTGGTCAACAGGGACTGCTTGCGATATTTTGGgtatgtattctcatttctcaagaactattttgaacatgtcgtgtaaaagttctctctatataatactccctccgtattttaatgtataacaccgttgact----