1 5' 3' | 2 5' 3' | 3 5' 3' |
TGATATATTCGAAGACTATGGTGGAATGAAGTCAGGAAGTCACTCACAGACTTTAGGGAGACTGTATGCTTGGGAGAAGAAACTTTATGAAGAAGTTAAGgtgggttttgttcttgaattttcactgagttcttggcctctgcgtttgttggagtccttttacagtttatttggtagcatagataatagaattccattat...
species | Zea mays |
transcript | GRMZM2G440831_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTTAGGGAGACTGTATGCTTGGGAGAAGAAACTTTATGAAGAAGTTAAG GTTATAGATCAAATCCGACAAACCTATGAGAAGAAATGTGTTCAGCTGAGGEST: gi|30270747|gb|BQ280273.1|BQ280273
genomic: CTTTAGGGAGACTGTATGCTTGGGAGAAGAAACTTTATGAAGAAGTTAAGgtgggttttg ... cctgtggcagGTTATAGATCAAATCCGACAAACCTATGAGAAGAAATGTGTTCAGCTGAGG
EST: CTTTAGGGAGACTGTATGCTTGGGAGAAGAAACTTTATGAAGAAGTTAAG GTTATAGATCAAATCCGACAAACCTATGAGAAGAAATGTGTTCAGTTGAGG
genomic: CTTTAGGGAGACTGTATGCTTGGGAGAAGAAACTTTATGAAGAAGTTAAGgtgggttttg ... cctgtggcagGTTATAGATCAAATCCGACAAACCTATGAGAAGAAATGTGTTCAGCTGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATATATTCGAAGACTATGGTGGAATGAAGTCAGGAAGTCACTCACAGACTTTAGGGAGACTGTATGCTTGGGAGAAGAAACTTTATGAAGAAGTTAAGgtgggttttgttcttgaattttcactgagttcttggcctctgcgtttgttggagtccttttacagtttatttggtagcatagataatagaattccattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT