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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATAATAAACAGTTCTGAGAAGGGGGAGAGTACCTCTGAGTCATTGGCTGATGACTGTATTCTACAGGCAACTATGTTTGCTCTCAATGCATTTATGAGgtattggtcaccatttgatggctcacttttgatgttgaggatggtaggcacattttcctcttctgattttacatacttcaaaaaaacatccaagctttacag

Basic information

species Zea mays
transcript GRMZM2G439866_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439866_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 5'ss of exon 17
TCATAATAAACAGTTCTGAGAAGGGGGAGAGTACCTCTGAGTCATTGGCTGATGACTGTATTCTACAGGCAACTATGTTTGCTCTCAATGCATTTATGAGgtattggtcaccatttgatggctcacttttgatgttgaggatggtaggcacattttcctcttctgattttacatacttcaaaaaaacatccaagctttacag
|   || |||   ||| || ||||||||||  |||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||   ||||||||||| | |||  || ||  ||  ||  | | |   ||||  | | || | ||||  | ||| |||| ||       | |||||||
TGGCAACAAATGATTCAGAAAAGGGGGAGATCACCTCTGAGTCATCAGCTGATGACTGTATTCTACAAGCAACTATGTTTGCTCTAAATGCATTTCTGAGgtactggcttccatttgatggttgactaatggtg--gacaat--tggtcttcttttgatatgctaagtttatgttcttgaaaacaatg---gggatttacag