1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacag
species | Zea mays |
transcript | GRMZM2G439201_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|22819207|gb|BU499297.1|BU499297
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: AAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|5740011|gb|AI947701.1|AI947701
genomic: AAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|32916009|gb|CF020821.1|CF020821
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: AAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCAT-GGACGATGAGACTGEST: gi|6918862|gb|AW400392.1|AW400392
genomic: AAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|211191967|gb|FL164730.1|FL164730
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: CTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|19822750|gb|BQ048774.1|BQ048774
genomic: CTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCTTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAANCCATGGGNCGATGAGNCTGEST: gi|18166242|gb|BM336081.1|BM336081
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTATAAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|15589956|gb|BI674572.1|BI674572
genomic: GCCGCCGCTGCCAAGGCCTCTTCT-AAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|15426968|gb|BI542790.1|BI542790
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|17929848|gb|BM266808.1|BM266808
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|78024595|gb|DV492982.1|DV492982
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCTTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|37396765|gb|CF635676.1|CF635676
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|78117318|gb|DV535705.1|DV535705
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: CTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|60357565|gb|DN224538.1|DN224538
genomic: CTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|4646632|gb|AI491461.2|AI491461
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|211477958|gb|FL457110.1|FL457110
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|33104035|gb|CF063995.1|CF063995
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCGAACCATGGGGCGATGAGACTGEST: gi|17930839|gb|BM267799.1|BM267799
genomic: GGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAAACCATGGGACGATGAGACTEST: gi|15353041|gb|BI502652.1|BI502652
genomic: GCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTC-AAACCATGGGACGATGAGACT
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|78082369|gb|DV510781.1|DV510781
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTCCCAAGGCCTCTTTTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|22549268|gb|BU101469.1|BU101469
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGEST: gi|6637144|gb|AW261416.1|AW261416
genomic: GCCGCCGCTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
EST: GCCGCTGCCAAGGCCTCTTNCTAAAAAGAAAGAAA GTGGTAAATCCTCCGTCCTTATGGATGTAAAACCATGGGACGATGAGACTG
genomic: GCCGCTGCCAAGGCCTCTT-CTAAAAAGAAAGAAAgtatgcataa ... atatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCAAGGCCTCTTCTAAAAAGAAAGAAAgtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacag
- - - - - - - - - AAAGAA
- - - - - - - - - - AAGAAA
- - - - - - - - - - - AAAGAA
- - - - - - - - - - - - AAGAAA