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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcctgtgccatgccgccttccgcttcttgaccacagcaccggctccgtgccggcagcatcggtccgtttgctgatgtgatgttttgggtccttttttcccccctttcgcttggggactggtgtcgctgtttgcag

Basic information

species Zea mays
transcript GRMZM2G437859_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55500.1 (Oryza sativa), 5'ss of exon 2
GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcctgtgccatgccgccttccgcttcttgaccacagcaccggctccgtgccggcagcatcggtccgtttgctgatgtgatgttttgggtccttttttcccccctttcgcttggggactggtgtcgctgtttgcag
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||   ||| ||||||  |    |||  |  |||   | ||| ||||   |    ||   ||| |  || || || |  |  |||||   |     | || ||  | ||  | || |                                   
GGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGACgtgagcgcc----gccgcg--gccgcactcttgttgatttcc---cccaatccat-tcgccaccacccatg-gtttgagaactcacttttctgctttctgctgtcgcag---------------------------------

upper sequence: GRMZM2G437859_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55500.2 (Oryza sativa), 5'ss of exon 1
--GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcctgtgccatgccgccttccgcttcttgaccacagcaccggctccgtgccggcagcatcggtccgtttgctgatgtgatgttttgggtccttttttcccccctttcgcttggggactggtgtcgctgtttgcag
  | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||   ||| ||||||  |    |||  |  |||   | ||| ||||   |    ||   ||| |  || || || |  |  |||||   |     | || ||  | ||  | || |                                   
AGGGGAGGCGATCATACTGGGATTCCAGCACTACATCCTGGCGCTGGGCACGGCGGTGATGATCCCGGCGGTGCTGGTGCCCATGATGGGCGGGAGCGACgtgagcgcc----gccgcg--gccgcactcttgttgatttcc---cccaatccat-tcgccaccacccatg-gtttgagaactcacttttctgctttctgctgtcgcag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211100340|gb|FL069921.1|FL069921
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCCGCGACCAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|50339069|gb|CO534195.1|CO534195
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCATGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|74244049|gb|DT651963.1|DT651963
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|149001123|gb|EE038382.2|EE038382
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|78084450|gb|DV512843.1|DV512843
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|211102812|gb|FL069930.1|FL069930
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAAACGCTGCTGTTCGTGA
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGA
EST: gi|211100342|gb|FL069923.1|FL069923
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGGTGGTGCAGACGCTGCTGTTCGTGACGG
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGG-TGGTGCAGACGCTGCTGTTCGTGACGG
EST: gi|71439895|gb|DR820945.1|DR820945
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|74243489|gb|DT651403.1|DT651403
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|149071736|gb|EE160129.2|EE160129
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|211102808|gb|FL069926.1|FL069926
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAA-C
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|71431026|gb|DR812076.1|DR812076
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|76923378|gb|DV169457.1|DV169457
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|74238882|gb|DT646796.1|DT646796
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|74240437|gb|DT648351.1|DT648351
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|91049745|gb|EB160163.1|EB160163
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|71449525|gb|DR830575.1|DR830575
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|211102809|gb|FL069927.1|FL069927
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|50331687|gb|CO526813.1|CO526813
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|211100336|gb|FL069917.1|FL069917
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAG
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAG
EST: gi|71310987|gb|DR791795.1|DR791795
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: gi|211100341|gb|FL069922.1|FL069922
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGGTCAGGGTGGTGCAGACGCTGCCTGTTCGTGGACGGGGGAT
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGG-TCAGGGTGGTGCAGACGCTGC-TGTTCGTG-ACGGGG-AT
EST: gi|71438783|gb|DR819833.1|DR819833
EST:     CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT                         GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC