Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTACACATGGATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTAAACCTGAACCAGgcaagaagctataaatctatgattttggttctttttgaaactggaacatgtactgagtaatgtgttccattttttgtgtgtgctggcaactcattctaatccctttaatcacccttatctttttttttggtgaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 5'ss of exon 2
GTTCTACACATGGATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTAAACCTGAACCAGgcaag-aagctataaatctatgattttggttctttttgaaactggaacatgtactgagtaatgtgttccattttttgtgtgtgctggcaactcattctaatccctttaatcacccttatctttttttttggtgaacag------------------------
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GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCAACCTTAACCAGgtaagcaaactgcaatgaacttaatttgaccagtacagggtctatatcttgtcgtca-tatcatgtcaaggaatgcttatgttattacagagtacattatttcttttaatt--ttttgtccttgttcactgacattgttttccacttcgctttttggaatag
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 2
GTTCTACACATGGATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTAAACCTGAACCAGgcaagaagctataaatctatgattttggttctttttgaaactggaa-catgtactgagtaat-gtgttccattttttgtgtgtgctggcaactcattctaatccctttaatcacccttatcttt-ttttttggtgaacag---------------------------
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GTGTTGCACATGGATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaactccaatgaactaaatttgaatagtagaggtttcatattcgcgtgcttatttcttgcgaagggatgcttatgttattacggagtacattata--tcctttgattaattctatctttgtttgtttactgacattggttttgaattcgcttttggattaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32850140|gb|CD989821.1|CD989821EST: ATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTAAACCTGAACCAG CTCTGGAAGAGGTTTAGGGGGGAAGACAAGCCACCGGCACATCTAGGTGCA
genomic: ATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTAAACCTGAACCAGgcaagaagct ... tggtgaacagCTCTGGAAGAGGTTTAGGGGGGAAGACAAGCCACCGGCACATCTAGGTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTACACATGGATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTAAACCTGAACCAGgcaagaagctataaatctatgattttggttctttttgaaactggaacatgtactgagtaatgtgttccattttttgtgtgtgctggcaactcattctaatccctttaatcacccttatctttttttttggtgaacag
- - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - GGAGAT