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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTACAAGGGCCGGGCGCCGCGCGGCGAGAAGACCAAGTGGGTCCTGCACGAGTACCGCCTCGACGGCGACTTCGCCGCCGCTCGCCGCCCCTGCAAGgtatgaactatagtacatgtaggagtacgtacgcagagctagctagattttcttgagttcctacaactaaaactgaaacggcgcagagctagctagatta...

Basic information

species Zea mays
transcript GRMZM2G430522_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G430522_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g40030.1 (Oryza sativa), 5'ss of exon 1
CTTCTACAAGGGCCGGGCGCCGCGCGGCGAGAAGACCAAGTGGGTCCTGCACGAGTACCGCCTCGACGGCGACTTCGCCGCCGCTCGCCGCCCCTGCAAGgtatgaactatagtacatgtaggagtacgtacgcagagctagctagattttcttgagttcctacaactaaaac-tgaaacggcgcagagctagctagatta--
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||  |||||||  | | |   | ||| |   | |      ||      | ||   | ||  |||      | | |     | ||  || |  | || ||  ||  |  |  
CTTCTACAAGGGCCGCGCCCCGCGCGGCGAGAAGACCAAGTGGGTCCTCCACGAGTACCGCCTCGACGGCGACTTCGCCGCCGCTCGCCGCTCCACCAAGgtaacacccacc-tgcat-tgccattgtcattgccattgcatctttgtctttctgaaaaaaaaaatcagtttcatgtcactgttctgaactt-ctgaagaaga

upper sequence: GRMZM2G430522_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0122g00800.t01 (Vitis vinifera), 5'ss of exon 2
---CTTCTACAAGGGCCGGGCGCCGCGCGGCGAGAAGACCAAGTGGGTCCTGCACGAGTACCGCCTCGACGGCGACTTCGCCGCCGCTCGCCGCCCCTGCAAGgtatgaactatagtacatgtaggagtacgtacgcagagctagctagattttcttgagttcctacaactaaaactgaaacggcgcagagctagctagatta--------
    |||||||||||  | || ||  | |||||||| |||||||||||  |||||||||||||||||||||| |||||| ||  |   |||| | | |||||||||    ||      | |     |  ||   | |    | | ||  |  | | |  |  | |   | | ||  | | |    |||   |    | | ||         
AGTTTTCTACAAGGGAAGAGCACCCAGAGGCGAGAAAACCAAGTGGGTTATGCACGAGTACCGCCTCGACGGTGACTTCTCCTAC---CGCCACACGTGCAAGgtaacgcctc-----cctccgccaccaccgccacc--tccacctccacctccctccgc-cgtgggaatcaagttaatagcctgcaacccactttcgttttgtcgtttt