1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCGGTTCGATTAGTCAGTTGTACCTCCCGGGAGCTAGTGGATCAGTGGAATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAGgtgcttttcctttgggactacttcctgtcttccttcagaaaatttggagtgcatcccacattcagtgacatccaattactcttttttgaaacctaaatct...
species | Zea mays |
transcript | GRMZM2G430027_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAG GTTCTGTTGGCAACCGGTGGTGGCCATCTTGTTTACCTAGAAATTAGGGATEST: gi|32945240|gb|CF050059.1|CF050059
genomic: ATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAGgtgcttttcc ... tgtgtcacagGTTCTGTTGGCAACCGGTGGTGGCCATCTTGTTTACCTAGAAATTAGGGAT
EST: ATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAG GTTCTGTTGGCAACCGGTGGTGGCCATCTTGTTTACCTAGAAATTAGGGATEST: gi|71771579|gb|DR969516.1|DR969516
genomic: ATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAGgtgcttttcc ... tgtgtcacagGTTCTGTTGGCAACCGGTGGTGGCCATCTTGTTTACCTAGAAATTAGGGAT
EST: ATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAG GTTCTGTTGGCAACCGGTGGTGGCCATCTTGTTTACCTAGAAATTAGGGATEST: gi|32942986|gb|CF047805.1|CF047805
genomic: ATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAGgtgcttttcc ... tgtgtcacagGTTCTGTTGGCAACCGGTGGTGGCCATCTTGTTTACCTAGAAATTAGGGAT
EST: ATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAG GTTCTGTTGGCAACCGGTGGTGGCCATCTTGTTTACCTAGAAATTAGGGAT
genomic: ATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAGgtgcttttcc ... tgtgtcacagGTTCTGTTGGCAACCGGTGGTGGCCATCTTGTTTACCTAGAAATTAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGGTTCGATTAGTCAGTTGTACCTCCCGGGAGCTAGTGGATCAGTGGAATGCACCAGCAGGATTCTCAGTCAATGTTGCTTCAGCTAATGCCAGTCAGgtgcttttcctttgggactacttcctgtcttccttcagaaaatttggagtgcatcccacattcagtgacatccaattactcttttttgaaacctaaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcccac