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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGGTTCCGCGTGCAGCATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAGgtgagggatcgattctgttctgtctattgtgtgtgctcttccagaaatacaaataatgcagcaattgtaaagcaggcatgttttggctgtggtcactttt...

Basic information

species Zea mays
transcript GRMZM2G427097_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G427097_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g45970.1 (Oryza sativa), 5'ss of exon 2
CCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGGTTCCGCGTGCAGCATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAGgtgagggatcgattctgttctgtctattgtgtgtgctcttccagaaatacaaataatgcagcaattgtaaagcaggcatgttttggctgtggtcactttt------
|||||||||||| || | ||||||| | ||| | ||||||||||||||||| || || ||||||||||| |||||||| ||||| |||||||||  ||||||||||     ||| || | ||   |   | |||  |           |  |||||||| |    |||||| ||      || |     |||  | ||        
CCCCAAAGACGATGGAACCTTGGCGTCCTTCATTGGGTTCCGCGTGCAGCACGACAATGCCCGCGGGCCAATGAAAGGTGGCATTCGCTATCACCCTGAGgtgagg-----attgtggtttgatgagaatctgtttttgattttgtccagtaataatgccggggatgtaaatcatcttccttattatc-tggaaatttgaccggag

upper sequence: GRMZM2G427097_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv16s0039g02720.t01 (Vitis vinifera), 5'ss of exon 2
CCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGGTTCCGCGTGCAGCATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAGgtgagggatcgatt--ctgttctgtctattgtgtg----tgctcttccagaaatacaaataatgcagcaattgtaaagcaggcatgttttggctgtggtcactttt
 || || || || || || ||||||||||  ||||||||||| |||||||||||||| || || ||||| ||||| || || ||| | ||||||  ||||||  | |||  | |   | || ||| | || |  |    ||  ||    ||      |  || |  |  | || |||| ||  |   ||||  | |  |   |   
TCCGAAGGATGATGGAAGTTTGGCGACGTATGTGGGGTTCCGTGTGCAGCATGATAATGCTCGTGGGCCCATGAAGGGAGGGATCAGATATCACCCTGAGgtttgtgattcactgattcttttgtttgttttcggattttgtcctgtttgattgctgagaaaagttgggaatgaaaaggagaga---tttgaatttttttgtt---

upper sequence: GRMZM2G427097_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv16s0039g02750.t01 (Vitis vinifera), 5'ss of exon 2
CCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGGTTCCGCGTGCAGCATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAGgtgagggatcgatt--ctgttctgtctattgtgtg----tgctcttccagaaatacaaataatgcagcaattgtaaagcaggcatgttttggctgtggtcactttt
 || || || || || ||| |||||||||  ||||||||||| |||||||||||||| || || ||||| ||||| || || ||| | ||||||  ||||||  | |||  | |   | || ||| |  | |  |    ||  ||    |       |  || |  |  | || |||| ||  || |      | | ||       
TCCGAAGGATGATGGAAGCCTGGCGACGTATGTGGGGTTCCGTGTGCAGCATGATAATGCTCGTGGGCCCATGAAGGGAGGGATCAGATATCACCCTGAGgtttgtgatttactgattcttttgtttgctttcggattttgtcctgtttggttgctgagaaaagttgggaatgaaaaggagagatttgaaattttttgtt------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654818|gb|BM499623.1|BM499623
EST:     ATGACAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAG                         GTTGATCCAGATGAAGTAAATGCCCTTGCTCAACTCATGACATGGAAGACA
genomic: ATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAGgtgagggatc ... tgtcgggcagGTTGATCCAGATGAAGTAAATGCCCTTGCTCAACTCATGACATGGAAGACA
EST: gi|18661831|gb|BM501601.1|BM501601
EST:     ATGACAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAG                         GTTGATCCAGATGAAGTAAATGCCCTTGCTCAACTCATGACATGGAAGACA
genomic: ATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAGgtgagggatc ... tgtcgggcagGTTGATCCAGATGAAGTAAATGCCCTTGCTCAACTCATGACATGGAAGACA
EST: gi|71772013|gb|DR969950.1|DR969950
EST:     ATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAG                         GTTGATCCAGATGAAGTAAATGCCCTTGCTCAACTCATGACATGGAAGACA
genomic: ATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCCGCTATCACAATGAGgtgagggatc ... tgtcgggcagGTTGATCCAGATGAAGTAAATGCCCTTGCTCAACTCATGACATGGAAGACA