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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGCCGCGTTCATGGTGGAGCTGGAGCGCTTCCATAAGGAGCACAGTCTCGAGTTCAAGCCGCCCAAGTTCTATGGCAAGGGCCTCAACTGCCTCAAgtgtgcatctgaactgaaccactcctactctgagatattccgtaccgtcttttgttgtctaaacgcacttgccccctgtttggctgtttggtgttgctatgttggaatccag

Basic information

species Zea mays
transcript GRMZM2G421899_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421899_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g48370.2 (Oryza sativa), 5'ss of exon 1
AGCAAGCCGCGTTCATGGTGGAGCTGGAGCGCTTCCATAAGGAGCACAGTCTCGAGTTCAAGCCGCCCAAGTTCTATGGCAAGGGCCTCAACTGCCTCAAgtgtgcatctgaactgaaccactcctactctgagatattccgtaccgtcttttgttgtctaaacgcacttgccccctgtttggctgtttggtgttgctatgttggaatccag
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AGCAGGCGGCGTTCATGGTGGAGCTGGAGCGCTTCCACAGGGAGCACGGCCTCGAGTTCAAGCCTCCCAAGTTCTATGGCAAAGGTCTCAACTGCCTCAAgtgcgtgtcttt-ctacacctctcgt-ttctgttagctcctcaacc---------cgagtacacccatct-cttctcgtctaa--gcttgctctgttccttttccaatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78076016|gb|DV504450.1|DV504450
EST:     CTCGAGTTCAAGCCGCCCAAGTTCTATGGCAAGGGCCTCAACTGCCTCAA                         GTTATGGAGGCAGGTCGCCCACCTGGGAGGCCACGAGCAG
genomic: CTCGAGTTCAAGCCGCCCAAGTTCTATGGCAAGGGCCTCAACTGCCTCAAgtgtgcatct ... tggaatccagGTTATGGAGGCAGGTCGCCCACCTGGGAGGCCACGAGCAG