1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAAATCGGCTTCATCTTACGTATGCAAACTTCACACATCCTTGCGAAGGTTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGACgtaagagttattatttgcacctttctactagcattgcagaatagttcgtaaataatcactgatcgtgttatctgtttctcattttccctgtag
species | Zea mays |
transcript | GRMZM2G421791_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGAC CATGCCCTGTTTGCTATGTTTCTGTGGATCAGGCATTTGCCTTGATGCCCCEST: gi|148987277|gb|EE031113.2|EE031113
genomic: TTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGACgtaagagtta ... ttccctgtagCATGCCCTGTTTGCTATGTTTCTGTGGATCAGGCATTTGCCTTGATGCCCC
EST: TTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGAC CATGCCCTGTTTGCTATGTTTCTGTGGATCAGGCATTTGCCTTGATGCCCCEST: gi|149097873|gb|EE183807.2|EE183807
genomic: TTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGACgtaagagtta ... ttccctgtagCATGCCCTGTTTGCTATGTTTCTGTGGATCAGGCATTTGCCTTGATGCCCC
EST: TTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGAC CATGCCCTGTTTGCTATGTTTCTGTGGATCAGGCATTTGCCTTGATGCCCCEST: gi|149087531|gb|EE176929.2|EE176929
genomic: TTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGACgtaagagtta ... ttccctgtagCATGCCCTGTTTGCTATGTTTCTGTGGATCAGGCATTTGCCTTGATGCCCC
EST: TTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGAC CATGCCCTGTTTGCTATGTTTCTGTGGATCAGGCATTTGCCTTGATGCCCC
genomic: TTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGACgtaagagtta ... ttccctgtagCATGCCCTGTTTGCTATGTTTCTGTGGATCAGGCATTTGCCTTGATGCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAATCGGCTTCATCTTACGTATGCAAACTTCACACATCCTTGCGAAGGTTTCTCAGTCCCTCCTCCCCTGGTTGATAAGAAACGCACTGGACCCCGACgtaagagttattatttgcacctttctactagcattgcagaatagttcgtaaataatcactgatcgtgttatctgtttctcattttccctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA