Sequence
atgc intronic sequence ATGC exonic sequenceAGGCCGAGAAAGATTTTCGAATGGAGGTTCAGACAATCGGGCGCGTCCGGCACAAGAACCTGGTGAGTTTGCTCGGCTACTGCAGCGAGGGAGCTTGCAGgtacagtgcaaattaccattaccattaccattgtatctaaacgagacatgaatgtacctcatcggcagtacgttgatccaaagagttgttgtgtcccccccccccccccccccccccccccatcgtcacttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G418289_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ36811 (Selaginella moellendorffii), 5'ss of exon 3
AGGCCGAGAAAGATTTTCGAATGGAGGTTCAGACAATCGGGCGCGTCCGGCACAAGAACCTGGTGAGTTTGCTCGGCTACTGCAGCGAGGGAGCTTGCAGgtacagtgcaaattaccattaccattaccattgtatctaaacgagacatgaatgtacctcatcggcagtacgttgatccaaagagttgttgtgtcccccccccccccccccccccccccccatcgtcacttcag
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AAGCCGAGAAGGAATTCCGAGTAGAAGTAGAGGCCATCGGTCGGGTGAGGCACAAAAACCTGGTGCGTTTGCTCGGCTACTGCGTGGAGATAAATTACAGgtacg--tcgaattctcgtgaaagattttttcac-tttggatgacgaacttctacag-----------------------------------------------------------------------------
upper sequence: GRMZM2G418289_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ27863 (Selaginella moellendorffii), 5'ss of exon 3
AGGCCGAGAAAGATTTTCGAATGGAGGTTCAGACAATCGGGCGCGTCCGGCACAAGAACCTGGTGAGTTTGCTCGGCTACTGCAGCGAGGGAGCTTGCAGgtacagtgcaaattaccattaccattaccattgtatctaaacgagacatgaatgtacctcatcggcagtacgttgatccaaagagttgttgtgtcccccccccccccccccccccccccccatcgtcacttcag
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AAGCCGAGAAGGAATTCCGAGTAGAAGTAGAGGCCATCGGTCGGGTGAGGCACAAAAACCTGGTGCGTTTGCTCGGCTACTGCGTGGAGATAAATTACAGgtacg--tcgaattctcatgaa-agagtttttcactttggatgacgaacttctacag-----------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71439854|gb|DR820904.1|DR820904EST: CACAAGAACCTGGTGAGTTTGCTCGGCTACTGCAGCGAGGGAGCTTGCAG GATGCTTGTTTACGAGTACATGGAGAAGAGTAATCTGGACAAGTGGCTGCA
genomic: CACAAGAACCTGGTGAGTTTGCTCGGCTACTGCAGCGAGGGAGCTTGCAGgtacagtgca ... gtcacttcagGATGCTTGTTTACGAGTACATGGAGAAGAGTAATCTGGACAAGTGGCTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCCGAGAAAGATTTTCGAATGGAGGTTCAGACAATCGGGCGCGTCCGGCACAAGAACCTGGTGAGTTTGCTCGGCTACTGCAGCGAGGGAGCTTGCAGgtacagtgcaaattaccattaccattaccattgtatctaaacgagacatgaatgtacctcatcggcagtacgttgatccaaagagttgttgtgtcccccccccccccccccccccccccccatcgtcacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT