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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATTGTGGTTTGTTTTGCTTTTTGTGACCTACGTACAGGGCTCAGAATCAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgatactatacttgctgactgttgctaaaaaaataatttcagtttcaggagttggtagtagtatacgactacgagagcagccgagcaggtgaatctaaattcagttttctgatgcggcggcgctgcag

Basic information

species Zea mays
transcript GRMZM2G416817_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416817_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g15000.1 (Oryza sativa), 5'ss of exon 3
GCCATTGTGGTTTGTTTTGCTTTTTGTGACCTACGTACAGGGCTCAGAATCAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgatactatacttgctgactgttgctaaaaaaataatttcagtttcaggagttggtagtagtatacgactacgagagcagccgagcag-gtgaatctaaattcagttttctgatgcggcggcgctgcag
                                        ||||| || ||||| ||||||||||||||||||||  | || ||||| || |||||||||||    |  || | | |   |  ||  || ||        | ||||    ||| || |      ||| || | |    |  |  |  |   ||  ||| | |      ||| ||  |                  
----------------------------------------GGCTCGGAGTCAATCGCTTCTTGGCAGGCCAACCTCCTATTTGAACCAGTTAAATTTGAGgtatcctactagtctgccatcctac-atttct-------cagtttc----tcatgaatgatggatagaat-caatcttgccaatattcattcattgtgcaccag----cagcttcat------------------