1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttgatgcccccttcagcttttctcaagctctcgggcttataggcggtagtgggcgttcgggttacccaaaaatttcgggtcgggtaattcaggt...
species | Zea mays |
transcript | GRMZM2G413857_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCEST: gi|19351457|gb|BM895989.1|BM895989
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
EST: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCEST: gi|21395240|gb|BQ539670.1|BQ539670
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
EST: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCEST: gi|87152801|gb|DY397590.1|DY397590
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
EST: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGCEST: gi|67023933|gb|CO452682.1|CO452682
genomic: GGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
EST: TTTGCTTCAGCGGTACTTCAGCATG GACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
genomic: TTTGCTTCAGCGGTACTTCAGCATGgtacttttga ... cttcgtgcagGACGTTCGTGGTAACGGGCAAGATCCTGAGTCAGAGATTGTCCAAGCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTATCAAACTTGCTTTATTACTACGGGACACGTGGGTTAGTCAAGGAAAGTTTGCTTCAGCGGTACTTCAGCATGgtacttttgatgcccccttcagcttttctcaagctctcgggcttataggcggtagtgggcgttcgggttacccaaaaatttcgggtcgggtaattcaggt
- - - - - - - - - - - - - - - - - - - - - - AAGGAA