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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatgctgtctttttttttctctccattgttgcattgattaattcaggcagccaaccactaaccattcttttcatgttaggtcaggttcttagttcttacatggttgtgtatgttaagtattgcag

Basic information

species Zea mays
transcript GRMZM2G413857_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G413857_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g09670.1 (Oryza sativa), 5'ss of exon 3
AGACATGTCTTGCTTCCAAGGATTGTTCTTCTGTCCGGAGGCTGCGTCCCTGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatgctgtctttttttttctctccattgttgcattgattaattcaggcagccaaccactaaccattcttttcatgttaggtcaggttcttagttcttacatggttgtgtatgttaagtattgcag
  | ||||||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||| ||| ||  | ||||||||||| |||||||| || ||||||| | ||| || || ||| || |   ||| | ||   |      |||||     |      |      ||  | | ||  |       ||| ||   || ||||                         
--ATATGTCTTGCTTTCAAGGATTGTTCTTCTGCCCAGAGGCCGCGTCGCTGTTGCTTCACAATTTTTGTATTTACCACATCACTCCTCAAGGTCATGAGgtcagtcatgatggctctttcttac---ccaatattatgtaagc--attca-----ctgtttgcccgtatttgctctgatacttacatgtgttattttgtcctacag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211436829|gb|FL403332.1|FL403332
EST:     TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAG                         TTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
genomic: TGTTGCTTCACAGTTTCTGCGTGTACCACATCACACCTCAAGGACACGAGgtcacttatg ... agtattgcagTTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
EST: gi|67011356|gb|CO440105.1|CO440105
EST:     ACACCTTAAGGAC-CGAG                         TTGGGAGCAGCTCCCATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC
genomic: ACACCTCAAGGACACGAGgtcacttatg ... agtattgcagTTGGGAGCAGCTCCGATTTCAGCTGATGTGCCTGTGCCATCTGTCGACGAC