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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTAAAGACAACTTTCTGAGAGTGAATCTCATTGGTGATTTTGGTGGTTATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAGgtgcatcatcaaattacaatacacatcctaaaactatcaatgtatttgcagtgttctttatgtgacttgaaaatatttttttaatgtgttacattgaag

Basic information

species Zea mays
transcript GRMZM2G412911_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G412911_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g18730.1 (Oryza sativa), 5'ss of exon 8
TTCTAAAGACAACTTTCTGAGAGTGAATCTCATTGGTGATTTTGGTGGTTATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAGgtgcatcatcaaattacaatacacatcctaaaactatcaatgtatttgcagtgttctttatgtgacttgaaaatatttttttaatgtgttacat----tgaag
||||  ||| |||||||||||||| ||  |  ||||||||| |  ||||||||| || |||||| |||||||||||  |||||||||||| ||  |||||||||||||||||||||  |||  |||||| | ||||||||| |||||| | | |   ||||||||||| |||| ||| ||  |||||| || ||    |||||
TTCTGGAGATAACTTTCTGAGAGTAAAAGTTGTTGGTGATTATACTGGTTATACAAGTATCCCATCATTTGAGGACAACTATCTTGTGACTCCACGGAAGgtgcatcatcaaattatgatagtcatcctgacactatcaatatatttgtaatttctgttatgtgactttaaaacattattgaaatgtgctatatgtgctgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74243362|gb|DT651276.1|DT651276
EST:     ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAG                         AGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
genomic: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAGgtgcatcatc ... tacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
EST: gi|76915075|gb|DV165808.1|DV165808
EST:     ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAG                         AGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
genomic: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAGgtgcatcatc ... tacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
EST: gi|76936583|gb|DV174787.1|DV174787
EST:     ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAG                         AGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
genomic: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAGgtgcatcatc ... tacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG