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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAGTTCGTGCCGCATGTTTCCCCCGGTTCCTCTTACCACCGGTTAATTTATGgtgagatttgaatctcatttcattttcccatttccatgtctgcagtgagaatgacggacggcggcggcagcggcgcggggccgtcgtggcgcatgtcgtt...

Basic information

species Zea mays
transcript GRMZM2G412899_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G412899_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g17500.2 (Oryza sativa), 5'ss of exon 1
--------------------------------------------------GCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAGTTCGTGCCGCATGTTTCCCCCGGTTCCTCTTACCACCGGTTAATTTATGgtgagatttgaatctcatttcattttcccatttccatgtctgcagtgagaatgacggacggcggcggcagcggcgcggggccgtcgtggcgcatgtcgtt
                                                  ||||||||||||||||||  |||||||||| | |||||||||||||||| || |||||    | ||| | |   ||  | || ||  || ||  ||| ||| | | |  || | | |  |  ||||    | | |  |   || ||                                                      
TTTCTCCGATCAGCGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctct--ttttttttccctgcgatttttttttgg-gtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcag----------------------------------------------

upper sequence: GRMZM2G412899_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 2
-------------------------------------GCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAGTTCGTGCCGCATGTTTCCCCCGGTTCCTCTTACCACCGGTTAATTTATGgtgagatttgaatctcatttcattttcccatttccatgtctgcagtgagaatgacggacggcggcggcagcggcgcggggccgtcgtggcgcatgtcgtt
                                     ||||||||||||||||||  |||||||||| | |||||||||||||||| || |||||    | ||| | |   ||  | || ||  || ||  ||| ||| | | |  || | | |  |  ||||    | | |  |   || ||                                                      
CGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctct--ttttttttccctgcgatttttttttgg-gtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcag----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211187601|gb|FL070471.1|FL070471
EST:     GTTCGTGCCGCATGTTTCCCCCGGTTCCTCTTACCACCGGTTAATTTATG                         GGTGGTGAACGAGCCCTTGGAGGTCATCTCCGCTGACCTTGGCTTCGCCGG
genomic: GTTCGTGCCGCATGTTTCCCCCGGTTCCTCTTACCACCGGTTAATTTATGgtgagatttg ... gatgacgcagGGTGGTGAACGAGCCCTTGGAGGTCATCTCCGCTGACCTTGGCTTCGCCGG