1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGATGTTTTGCGAGTAGTCACTATACAAGCTTTGCCGTGAAAAAACTTGTCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagccttttgtttttcactctttcggtgttctcactgtgcttcttgtgaaatcatatttgattaccttttctgcag
species | Zea mays |
transcript | GRMZM2G410515_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTCGAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTATEST: gi|211002473|gb|FL018192.1|FL018192
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAT
EST: TCTCGAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTATEST: gi|211417844|gb|FL018174.1|FL018174
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAT
EST: TCTCGAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAEST: gi|211417848|gb|FL018178.1|FL018178
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTC-TGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTA
EST: TCTCGAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTATEST: gi|211417840|gb|FL018170.1|FL018170
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAT
EST: TCTCGAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTATEST: gi|89248325|gb|DY620111.1|DY620111
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAT
EST: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAAEST: gi|211417841|gb|FL018171.1|FL018171
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAA
EST: TCTCGAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTATEST: gi|74236167|gb|DT644081.1|DT644081
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAT
EST: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTATEST: gi|211002466|gb|FL018185.1|FL018185
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAT
EST: TCTCGAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAG GTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAT
genomic: TCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagcctt ... ttttctgcagGTTGTCTGCAAGGATTTTCCAAGACCTCCACTAGAAAGCACAATAAACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATGTTTTGCGAGTAGTCACTATACAAGCTTTGCCGTGAAAAAACTTGTCTCAAGGAATAAAGGAAGGAGATCACACCGTAGACATCCTGCCTTGCAGgttcagccttttgtttttcactctttcggtgttctcactgtgcttcttgtgaaatcatatttgattaccttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA