ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat...

Basic information

species	Zea mays
transcript	GRMZM2G409407_T02
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G17370.2 (Glycine max), 5'ss of exon 1

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctg--tgcttaccctctttcagccttccaatat---gttgcgtgcttgaattcaagacttagttgtttacagatagt--ttgccatgccctgcaaat--------------------------------------------------
|| || || ||||||||||| |||||||||  ||| |||||||| |||||||| ||||| ||||| || || || ||||| |||   ||  | ||  | ||| |  |   ||     ||| | || ||| | | ||  ||||     ||      |     | || ||||     |  | | | |    |   | ||   ||  ||                                                   
CATAATAATGTTATCCCCAATGGGCACTTCCGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCCGAAAGACCAGAAGACGGTTGGgtaatttaacctaatctcttgctcttttttaacattgtaatacttaattaatcagtctggcttaatacttgtaattcaagaaacaagaatcagcttgagttgtcaacaattgttgtgtgtatctttatattttgactcgtgggtaacactttttcag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagct--cttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagacttagttgttta-cagatagt-ttgccatgccctgcaaat---------------------------------------
|| ||||| |||||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||| | ||  | ||| |  |  | | | | |||    | ||  | | ||  | ||  |  |||| | |  ||      | |   | | | ||||| |  ||   ||     |    |                                       
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgctta---ccctctttcagccttcc------aatatgttgcgtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat--------------------------
|| ||||||||||||||||| |||||||||| ||| |||||||| |||||||| ||||| ||||| || || || || || |||   ||  | ||  | ||| |  | | |     |||   | || | | | | ||        |||   ||      |    ||  |    | ||| |  |   | |||    ||      |  | |                          
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagct--cttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagacttagttgtttac----agatagt-ttgccatgccctgcaaat-----------------------------
|| ||||| ||||||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||  | ||  | ||| |  |  | | | | |||   || ||  | | |   | ||  ||  ||| | |  ||      | |   | | |     || |||| ||    |  | |  || |                             
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat
||||||||||||||||| | |   |||||    |||||||||||||| ||||||||||| ||||| |||||||| ||| | |||   ||| | ||  | ||||||   |   ||   |||  | | |    |||  |||   ||  |  ||| | || || | |   |  ||      | || ||   ||   |   |  
CACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGgttag---taaagtctctacattttcta---ctttaaatg-attttgctcttaattttaatagtgtatgtttctt---ttgtgtgatgtgttttctcag-

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagacttagttgtttacaga--tagtttgccatgccctgcaaat
|||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| ||| | ||    ||  |  | || ||||||   |  |    | | |   | | |   |  ||   |||| |||  || | || |      | |   ||   |   || | ||  |||   | || | 
CACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagtagtaatgtcaacacttctgatattgtca---tgtttcgt-tttaagtttacactacaatctctttgggtcttattatgttatgttgtacacag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 5'ss of exon 1

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagac--ttagttgtttacagatagtttgc-catgccctgcaaat-
|| ||||| ||| | || || |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     |  |  |  | |||  |  ||| |   |||   ||   | | | |  | || | |||     |    ||| | ||  ||     |||  |   |||  ||  |     ||    | 
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCCCGCAAAACCCGAAGAAGAGTTGgtatgggctttttctctt---ctaggttaacttgtccatttcttgt-cattgagtttctataccattgtggatttgaatggagtaggcataaaatttgtgggtt

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgt-------tagctcttct------gtgcttaccctctttcagcctt-ccaatatgttg--cgtg----cttgaattcaagacttag-ttgtttacagatagtttgccatgccctg-caaat------------------
|| ||||| ||| | || || |||||||||||||| || |||||||| |||||||| || ||||| ||||| || || |||||    ||  | || || |||       || |  || |      |   |     | || | | ||| | |||  ||||  | |      |    ||||  |   || ||| |||      | | ||  |  | || ||  |                  
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctacttaaccattttaaaatggaaatggtgtttttcctgtcttgctaattagttggtcataatgattctgtttcattatcaagcttgcttattctgtgctcgcattttcttgacatgtctgttataccatctccag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgct-taccctctttcagccttccaatatgttgcgtgcttgaa--ttcaagacttagttgtttacagatagtttgccatgccctgcaaat
|| ||||| ||||||||||| || |||||||||||| ||||||| |||||||| | ||| ||||| |||||||||||||||||| | ||  |  | |  |||||||    |   ||| ||             || |||  |||    |  ||||   |  | ||  |   ||    | |  |   |   |      |     
CATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatcccaccgctgtattggtgaatttggttacaaactgtccgttatttgagactctatgatatgtgtgacagcggtaaccctaggacctttggtg---

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaatatgt-tgcgtgcttgaattcaagacttagttgtttacagatagtttgccatgc-cctgcaaat----
|| |||||||| || ||||| || |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  ||| || | |   |   ||    || | |  | ||  | ||||  |  ||   | |||| |  | | |  |    ||   |  |   | ||||  || |||      
CATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta--ggctttgttatcctccgtcttttgattatggattagttaattaatttagtaatgaaat-cccacgcgtgat---caatgcgtctacaaccatag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaata-tgttgcgtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat
|| ||||| || ||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||||||||||| |||||| ||||  |  | |  |||    || |   |   |      |||     ||   |   || | || || |   ||    ||  |||| ||  |     ||||   ||  |  | |   
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttgtttttatgacggtggtacgggcgttt-tttggaacacagttcttgtccatgtgtttcttataactcgaacca

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaatatgttgc--gtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat-------
|| ||||| || ||||| ||||| || ||||||||| ||||||| |||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  |||  |  |||        || |  ||  ||| | |    |||   |  |||| ||| ||  |   ||  || ||||    |    |    || | |||   |       
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttac------actcctttgaagcttgctgtaatggaactagtgcgtgagtttca--tttgtttttttatttttgacctagggtgtc-tgcgtgtttaaggc

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 5'ss of exon 2

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat-
|| || || ||||||||||| || |||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||| | ||  |  | | ||| || || |  | |  |       |       |     |  | |      |   |   |||  | | || |||      |   |  ||  ||||   ||| 
CATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAG-AACGGgtaactatagttttttcggatcttcctgaattggttgttagctttcccttattacggaagtgtaatttttttgtctggaacatctcaaaccctatgaatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211263649|gb|FL031053.1|FL031053

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266085|gb|FL031064.1|FL031064

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|13558589|gb|BG549945.1|BG549945

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211263644|gb|FL031048.1|FL031048

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211247721|gb|FL179851.1|FL179851

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266082|gb|FL031061.1|FL031061

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266086|gb|FL031065.1|FL031065

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211263648|gb|FL031052.1|FL031052

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211247720|gb|FL179850.1|FL179850

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211456254|gb|FL273553.1|FL273553

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211129396|gb|FL066372.1|FL066372

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|78085923|gb|DV514316.1|DV514316

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266087|gb|FL031066.1|FL031066

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|33091972|gb|CF051966.1|CF051966

EST:     TGTCAAGACATGGTTCAACCAGCCCGCGCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211263643|gb|FL031047.1|FL031047

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCTCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211263650|gb|FL031054.1|FL031054

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|27522089|gb|CA989195.1|CA989195

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|6973668|gb|AW438242.1|AW438242

EST:     TGTCAAGACATGGTTCAACCAGCCCGCGCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|29946616|gb|CB816239.1|CB816239

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266077|gb|FL031056.1|FL031056

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266083|gb|FL031062.1|FL031062

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|7238188|gb|AW573410.1|AW573410

EST:     TG-CAAGACATGGTTCAACCAGCCCGCGCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266080|gb|FL031059.1|FL031059

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211263641|gb|FL031045.1|FL031045

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|78180971|gb|DV551344.1|DV551344

EST:     TGTCAAGACATGGTTCAACCAGCCCGCGCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211263645|gb|FL031049.1|FL031049

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266081|gb|FL031060.1|FL031060

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

EST: gi|211266084|gb|FL031063.1|FL031063

EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 195

CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 210

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 190