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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcctatcctcgctagtcttttcctgacaccttgcattatcatttcccgatgtgaatcagctttagattctacactgcttctgtattgtgcacta...

Basic information

species Zea mays
transcript GRMZM2G408242_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408242_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g32680.1 (Oryza sativa), 5'ss of exon 2
CTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcctatcctcgctagtcttttcctgacaccttgcattatcatttcccgatgtgaatcagctttagattctacactgct-tctgtattgtgcacta---
||||||||||  ||||||||||||  ||| ||   ||||||| | || || |||||||||| ||| |||||||||||| |||||||||| ||||| ||||||||||| ||   | |  |||  ||    |||  | || | ||  |         |     ||||||   |  ||        |  |||  || || | |    
CTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttctcctccctttagctttcctgtgatgcttt-cgttgacgcgaatttgttc---tcagctccgggctcggtgtgattgcctggtttctggaattggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211116523|gb|FL229712.1|FL229712
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116525|gb|FL229714.1|FL229714
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|88748070|gb|DY532211.1|DY532211
EST:     AGGCATCACGCCAGAAGAGTTCCCCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115736|gb|FL229707.1|FL229707
EST:     GGCATCACGCCGGAAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: GGCATCACGCCGG-AAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115731|gb|FL229702.1|FL229702
EST:     AGGCATCACGCCGNAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117332|gb|FL229741.1|FL229741
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115739|gb|FL229710.1|FL229710
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116530|gb|FL229719.1|FL229719
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115740|gb|FL229711.1|FL229711
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116529|gb|FL229718.1|FL229718
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117322|gb|FL229731.1|FL229731
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116535|gb|FL229724.1|FL229724
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116537|gb|FL229726.1|FL229726
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117328|gb|FL229737.1|FL229737
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116524|gb|FL229713.1|FL229713
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117330|gb|FL229739.1|FL229739
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116528|gb|FL229717.1|FL229717
EST:     GGCATCACGCCGGNAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: GGCATCACGCCGG-AAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|18650040|gb|BM498859.1|BM498859
EST:     AGGCATCACGCCGGAGGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116534|gb|FL229723.1|FL229723
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|22818772|gb|BU498862.1|BU498862
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|17970138|gb|BM276903.1|BM276903
EST:     AGGCATCACGCCGGAGGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|5325108|gb|AI783299.1|AI783299
EST:     AGGCATCACGCCGGAGGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|19822800|gb|BQ048824.1|BQ048824
EST:     AGGCATCACGCCGGAGGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116533|gb|FL229722.1|FL229722
EST:     WGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115728|gb|FL229699.1|FL229699
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117326|gb|FL229735.1|FL229735
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211114947|gb|FL229695.1|FL229695
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116532|gb|FL229721.1|FL229721
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115733|gb|FL229704.1|FL229704
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116531|gb|FL229720.1|FL229720
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117318|gb|FL229727.1|FL229727
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|74235410|gb|DT643324.1|DT643324
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115727|gb|FL229698.1|FL229698
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|50333682|gb|CO528808.1|CO528808
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117324|gb|FL229733.1|FL229733
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117325|gb|FL229734.1|FL229734
EST:     AGGCATCACGTCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|6020447|gb|AW065375.1|AW065375
EST:     AGGCATCACGCCGGAGGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117323|gb|FL229732.1|FL229732
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|149084617|gb|EE174095.2|EE174095
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117321|gb|FL229730.1|FL229730
EST:     GGCATCACGCCGGAAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: GGCATCACGCCGG-AAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115734|gb|FL229705.1|FL229705
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115735|gb|FL229706.1|FL229706
EST:     GGCATCACGCCGGNAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: GGCATCACGCCGG-AAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|148990759|gb|EE032170.2|EE032170
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|93015766|gb|EB641286.1|EB641286
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115729|gb|FL229700.1|FL229700
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211114948|gb|FL229696.1|FL229696
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|26456727|gb|CA828310.1|CA828310
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|20803321|gb|BQ294371.1|BQ294371
EST:     AGGCATTACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTTT                         TTATCTGTTTGTCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTG-GAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115737|gb|FL229708.1|FL229708
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|22521612|gb|BU080423.1|BU080423
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115732|gb|FL229703.1|FL229703
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCYATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115730|gb|FL229701.1|FL229701
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117331|gb|FL229740.1|FL229740
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211114945|gb|FL229693.1|FL229693
EST:     AGGCATTACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117319|gb|FL229728.1|FL229728
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116526|gb|FL229715.1|FL229715
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211115726|gb|FL229697.1|FL229697
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211117329|gb|FL229738.1|FL229738
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|148937775|gb|EC881986.2|EC881986
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
EST: gi|211116527|gb|FL229716.1|FL229716
EST:     AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCC                         ATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG
genomic: AGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 124

CTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 122

CTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 169

CTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 114

CTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcct ... atgatttcagATATCTGGAGGCTAGCACAGCAGGTTAAAGTTAGGCAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcctatcctcgctagtcttttcctgacaccttgcattatcatttcccgatgtgaatcagctttagattctacactgcttctgtattgtgcacta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA