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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGgtggaggagagtacagtgcaagcccgacttcttgtattttatataaaaaagatgtgtggtgtgtcttataaccatatttatcgccatatttacatgtaaaaactgcagtagatgaccttctctctctctctccctctcttcaaagtgcag

Basic information

species Zea mays
transcript GRMZM2G408242_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408242_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 4
GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGgtggaggagagtacagtgcaagcccgacttcttgtattttatataaaaaagatgtgtggtgtgtcttataaccatatttatcgccatatttacatgtaaaaactgcagtagatgaccttctctctctctctccctctcttcaaagtgcag
                      |||||| |||| ||||| || ||||||||||||||||| |||||||| ||||| |||||||||||  |||||||||| ||||| ||||||||||||||||||  | || |||| ||||  |     ||||||||   | || ||||||| ||    |        |     ||| | | |  |||| || ||
----------------------CCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctcataatcataaatggacacatatttatcgggaagaactgcactaacctaaaactaaacatgtgctctccccccgcaaaatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78021949|gb|DV490336.1|DV490336
EST:     ACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAG                         GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
genomic: ACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGgtggaggaga ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: gi|5860411|gb|AW011633.1|AW011633
EST:     ACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAG                         GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
genomic: ACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGgtggaggaga ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA