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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggagtgattgtaaactgtggctccatggttgagtaggaaaacagaaccctttgctgactttgaag...

Basic information

species Zea mays
transcript GRMZM2G406553_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 5'ss of exon 2
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggagtgattgtaaactgtggctccatggttgagtaggaaaacagaaccctttgct-gactttgaag--
|||||||||||||||||||||||| ||||| ||||| || || |||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||   ||| |  || |||  |    |||||       |||||| ||||| || || |   |  ||| ||  |   |       | | |  ||  |  
CTGCCTCAAGATTGGGAGGAAGACTTCACGAGTTCTCGTGACAGGAGGAGATGACCATAAGGTTAATCTTTGGGCTATTGGGAAGCCCAATTCAATTTTGgtaagtctctattgtcctgttctgacta---gtatgcctactatgtaaaatgtggttctatagcaaaacaggcaagtaagtctacccaatagtcaatggggca

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G00890.1 (Glycine max), 5'ss of exon 3
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggagtg-attgtaaactgtggctccatggttgagtaggaaaacagaaccctttgctgactttgaag---
 ||||||||||||||  ||||  | ||  ||||||||||||| ||||| || ||||| ||||||||||||||||||||||| || || ||| | || |||||  |  |  ||   ||       | |||    | ||| |  |||||    | ||  |   |   |  ||       || |   |  | |||  ||  |||   
TTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGCAAACCTAATGCCATACTGgttcg-ttcgttctcctctcctcatctctggacaaggatttcattgttc-ttatgcattgttttctttgtgccctttcacatttcaattctg--ttcaaagcta

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 3
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggagtgattgtaaactgtggctc-----catggttgagtaggaaaacaga-accctttgctgactttgaag
 ||||||||||||||  ||||  | ||  ||||||||||||| ||||| || ||||| ||||||||||||||||||||||| || || ||| | || |||||  |   |  |   ||       | |||    | ||| |   ||| |    | | ||     ||| |||   |  |    |    ||  || ||| ||||  |  
TTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGCAAACCTAATGCCATACTGgttcgttctcctctact-----cttctctggacaaggattttatgtcattcattgttcgtatgcattgttttctttgtgccctttcacatttagctaacttgcac-

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: AT5G08390.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaaga-cttatttggctagtgc-tgtttctatgtatggagtgatt--gtaaactgt-----ggctccatggttgagtaggaaaacagaaccctttgctgactttgaag--------------------------------------
 || || ||||||||||||||| ||||  ||||||| || || || ||||| ||||| ||||| ||||| ||||||||||| ||||||||  | || ||||| ||  || ||||  |     | || |||||| |  ||| ||  |  ||| |  ||     ||      |    | |    | | |      ||    |  || |||                                       
TTGTCTTAAGATTGGGAGGAAGTCCTCCAGGGTTCTCGTTACAGGCGGAGAAGATCACAAGGTTAATCTATGGGCTATTGGTAAGCCCAACGCCATCCTGgttagttctcatttctccctcccctgcttctat-tgcggaatgcctcggtatatagtttaggggaaatgcgacatactttagatataatgtagttgagcgggttggaatattttctgtctgagtacttgtggttgttttgtggtcag

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 3
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggagt----gattgtaaactgtggctccatggttgagtaggaaaacagaaccctttgctgact--ttgaag----
 || || ||||| || |||||| | ||  ||||||| || || || || || ||||| ||||||||||||||||||||||| ||||||||| | |||||||| ||  || |  | ||| || | |   ||||| | |  |    | | ||| | |||  ||    | || | |          | | | ||  ||  |  |||  |    
TTGTCTTAAGATCGGAAGGAAGTCTTCTAGGGTTCTGGTAACAGGTGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGTAAGCCCAATGCCATTCTGgtcag--ttctcggtctactgtt-tcattatgtgttggttataagttagtagagtgtttctatgggattcactctttctgagtatctcatttgtgcttgtttgttgtcag

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 2
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggagtgattgtaaactgtggctccatggttgagtaggaaaacagaaccctttgctgactttgaag
||| |||||||||||||||||| | ||  |||||||||||||||| ||||| ||||| ||||| ||||||||||| || || ||||||||| | || |||||||    |  ||      |  |  |  | | |   || |          |     ||||| |||  | |        |||        |    | ||  
CTGTCTCAAGATTGGGAGGAAGTCATCCAGGGTTCTTGTCACCGGTGGAGAAGATCACAAGGTGAATCTTTGGGCCATCGGCAAGCCCAATGCCATACTGgtaactacttcttactctctctttctcttctattctgatttccccctttttcgtaatccatcgtttcgcatcggctgggaatttcaatatttggtggata

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: PP1S101_210V6.1 (Physcomitrella patens), 5'ss of exon 2
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggag---tgattgtaaactgtggctccatggttgagtaggaaaacag-aaccctttgctgactttgaag---
||||||||||||||||| |||| ||||  ||||  | |||||||| ||||||||||| || |||||  | ||||||||||||||||||||  | ||  ||||| |      ||||| | ||      | | | | ||||   | | | |  ||| | ||| |||   |      |    |   | | |  |   |  | |       
CTGCCTCAAGATTGGGAAGAAGTCCTCTAGGGTCTTGGTCACCGGCGGAGAGGATCACAAAGTCAACATGTGGGCTATTGGGAAGCCCAACGCTATATTGgtatg------ttggcca-tgtgaaccccaagaaaggagaaataactctttactttcgctgcatttcttttctcgtcgtcgttagctccgtatcgtgtctcctttag

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: EFJ23110 (Selaginella moellendorffii), 5'ss of exon 2
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggagtgattgtaaactgtggctccatggttgagtaggaaaacagaaccctttgctgactttgaag
||| || || || ||||  ||  |||||||||| |||||||||||||| |||||||| || || ||  | |||||||| || ||||| ||| |||| ||||||||    |    |||| |  | |||   | | ||   |  | ||  | ||| | |   | |                                     
CTGTCTTAAAATCGGGAAAAAATCCTCACGGGTGCTTGTCACCGGAGGTGAGGATCACAAAGTGAACATGTGGGCTATCGGCAAGCCAAATGCAATCCTGgtaagctaca---agctatttttcttttcct-tttgtcttactagtccaatgttg-tttgtag-------------------------------------

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 2
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaag-acttatttggctagtgct--gtttctatgtatggagtgattgtaaactgtggctccatggttgagtaggaaaacagaacccttt---gctgactttgaag--------
 ||||||||||| |||||||| || || ||||| || |||||||| ||||| ||||| ||||||||| | ||||| || || ||||||||  | |||||||| || ||   ||| | ||  |||  |     |||  | | |  ||| ||  |  |||||    |  |   ||      || |    |||   |     |||| |         
TTGCCTCAAGATCGGGAGGAAAACATCGCGGGTGCTCGTCACCGGTGGAGACGATCACAAGGTCAATATGTGGGCGATCGGCAAGCCCAACGCGATTCTGgtgagcacagcttttgataaagctaggaaagcatgcttaggggcattctaggc-atggctgggagagtatctatttctccacagttttttcaagtgtggtttggaaccttgcag

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: EFJ20167 (Selaginella moellendorffii), 5'ss of exon 2
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaagacttatttggctagtgctgtttctatgtatggagtgattgtaaactgtggctccatggttgagtaggaaaacagaaccctttgctgactttgaag
||| || || || ||||  ||  |||||||||| |||||||||||||| |||||||| || || ||  | |||||||| || ||||| ||| |||| ||||||||    |    |||| |  | |||   | | ||   |  | ||  | | | | |   | |                                     
CTGTCTTAAAATCGGGAAAAAATCCTCACGGGTGCTTGTCACCGGAGGTGAGGATCACAAAGTGAACATGTGGGCTATCGGCAAGCCAAATGCAATCCTGgtaagctaca---agctatttttcttttcct-tttgtcttactagtccaatcttg-tttgtag-------------------------------------

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
lower sequence: EFJ26184 (Selaginella moellendorffii), 5'ss of exon 2
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaag-acttatttggctagtgct--gtttctatgtatggagtgattgtaaactgtggctccatggttgagtaggaaaacagaaccctttgctgactttgaag
 ||||||||||| |||||||| || || ||||| || |||||||| ||||| ||||| ||||||||| | ||||| || || ||||||||  | ||||||||||| ||   ||| | ||  |||  |     |||  | | |  ||| ||  |  |||||    |  |   ||      || |    |||    | | ||   
TTGCCTCAAGATCGGGAGGAAAACATCGCGGGTGCTCGTCACCGGTGGAGACGATCACAAGGTCAATATGTGGGCGATCGGCAAGCCCAACGCGATTCTGgtaagcacagcttttgataaagctaggaaagcatggttaggggcattctaggc-atggctgggagagtatctatttctccatagtttttt--caagtgtggtt